BAC Information

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BAC

Clone NameMSMg01-346M10
Chromosome5 (Build37)
Map Location 26,804,117 - 26,804,386
singlet/doubletsinglet
Overlap gene4930584F24Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream geneDpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346M10.T7 (MSMg01no346_m10.b1)MSMg01-346M10.TJ (MSMg01no346_m10.g1)
ACCAG459281AG459282
length782774
length of high quality
(start - end)
272 (37 - 308)358 (68 - 425)
definitionCHROMAT_FILE: MSMg01no346_m10.b1 PHD_FILE: MSMg01no346_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005CHROMAT_FILE: MSMg01no346_m10.g1 PHD_FILE: MSMg01no346_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TGTACCACCAATGACATGAGATGTTCTGGCTAGATCAAAGAATGAGTACA
TGATTTCATGCTATGTGACAAGTAGGACCCTCAGTGCCCATATCATAGAA
AATTTAACATGTGGCTTTCAGCATTAACCTTTCTAACTGTTCGATCATTC
AATATTTGTCCTTTTCAAATATCTATTTTGGTATTGTGTGGTGGTTTGAA
TGTAACTGGCTCCTATAGGCCCATAGAGAGTAGCACTACTAGGACATGCG
GCCTTATTGTTTTAAGTACGGCCTTGTTGAAGGAATGTGTCACTGTGGAT
GTCCCCCTTTTGCTCCAGATGAACCTCTATTGGGCCTCCAATCTGTTTGG
AACCCCCCCCCCGCCTGCTTTTGCCCCATTTTCCGCCGAAACCCCGTCTT
ATGCACTCTTTCCCCTCTCCACGTCCGATTTTCACTTCCTCTCGATTTTC
TCCAACTCCCCTTTTCTCCCCTTCACTAATTTCATCCTTCCCCACCTCCA
TTTTACTCCTTTCCCCTTTTTCTACCCCCCCCCGCTCTCCTTAATCTTTT
TACTCTTCTTACCTCTTCCTCCACTCTTTCCTCTTTTTACCTTCTCTTTA
CCATTTTCTCCTCCTCTCCTCCCTTTTTATTCTTATTCTCCCCCCACCCC
CCTCCGCTTTTTTTATTCTTATTAATCTCTCACCCTTATTCTTTACCATC
ACCCTTCTCTCCTCCTTTATCACCACCCCCCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTACTCCTAACATATAGCACTCTATAACACA
CATTCATTCATGATCCCGTGAACCAGATATTGAGTAATATACAGCCATTG
TTCTAGAGCTGCTGCGGATATAAAAACACTCAGAAAGGAATATAAAATAA
ATCAGGAAGGCCAGAGCCATGTGCCTCAGTTTATTTGCAATAGAGCATCA
GTGATTGCGGAGAACAATGGCTTCCCTTTCGTTCTGCCCTGAAAGGGTCA
GAGCCCTTAACTGGGGAAAGGTCATGGGTCGTTCCTCCTGAAAGGGAGGG
ATGTCTAAACATGACTTTCTGTGAGCCAGAATTTTTTCTTGTTCCTAGTC
AAGAGCTAATATTTACCCTGAGAGGAAGATGCCCTTGGGTCTTCAGATAA
CAGTTTCTTCTTCTGAAATTCATTCTTGTTATGAGAAAATGACTCCAAAA
TATATAATATTGTTTGCCTGATTCCCCCTAATAAAAATGCTATTTTTTCG
TAGTTAAACTATTCCAATTTCTATTCCCTGTTTCTCAAGCTGTTTTACAC
CTTTTTATCCCTCGCTACTCGCCTCCTTCCATCTTTTATTCTTCCCGCTT
CTTTTTTTTTCTTTTTTTCCTTCCTTGCCCCCTTTTCTTCTGTTATCCCT
TTCACGTTATAATATCCGCCACCTTTTTTGTCCTTTTGTTATCCCCCTAC
ATTTTTATACCACTTTTCTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_m10.b1 MSMg01no346_m10.b1 CHROMAT_FILE:
MSMg01no346_m10.b1 PHD_FILE: MSMg01no346_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:33 2005
         (272 letters)



>mm_chr5_26803986_26804658
          Length = 673

 Score =  453 bits (234), Expect = e-132
 Identities = 261/270 (96%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattgtgtaccaccaatgacatgagatgttctggctagatcaaagaatgagtac 63
           |||| |||||||| |  |||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 401 ggaactcattgtggaaaaccaatgatatgagatgttctggctagatcaaagaatgactac 342

                                                                       
Query: 64  atgatttcatgctatgtgacaagtaggaccctcagtgcccatatcatagaaaatttaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atgatttcatgctatgtgacaagtaggaccctcagtgcccatatcatagaaaatttaaca 282

                                                                       
Query: 124 tgtggctttcagcat-taacctttctaactgttcgatcattcaatatttgtccttttcaa 182
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 tgtggctttcagcatctaacctttctaactgttcaatcattcaatatttgtccttttcaa 222

                                                                       
Query: 183 atatctattttggtattgtgtggtggtttgaatgtaactggctcctataggcccatagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 221 atatctattttggtattgtgtggtggtttgaatgtaactggctcctataggcctatagag 162

                                         
Query: 243 agtagcactactaggacatgcggccttatt 272
           ||||||||||||||||||||||||||||||
Sbjct: 161 agtagcactactaggacatgcggccttatt 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)