Query= MSMg01no347_e15.b1 MSMg01no347_e15.b1 CHROMAT_FILE:
MSMg01no347_e15.b1 PHD_FILE: MSMg01no347_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:13 2005
(557 letters)
>mm_chr5_106019097_106020054
Length = 958
Score = 994 bits (514), Expect = 0.0
Identities = 544/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 5 gaattcattagctcaccttcacaagagagaacattatcagctctgaagatgaaccatcgc 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcattagcacagtttcacaagagagaacattatcagctctgaagatgaaccatcac 264
Query: 65 ttaa-agaaatgggagtccagttgtaagaatttgtatccagtgtataagactatgaactt 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatagaaatgggagtccagttgtaagaatttgtatccagtgtataagactatgaactt 324
Query: 124 gataaaccgggtctcatctgtgggattcacccctgtaccctcaaaatggaaagcagcagc 183
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 gataaaccaggtctcatctgtgggattcacccctgtacactcaaaatggaaagcagcagc 384
Query: 184 aagcccctgtaactgctcaaaggagtgggaagccaagagttacaaatagcacgttaacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcccctgtaactgctcaaaggagtgggaagccaagagttacaaatagcacgttaacca 444
Query: 244 tctactgacagcaagcatatgagagctgggaaaggggctgaatgctgagttacactcatg 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tctactgacagcaagcatatgagagcagggaaaggggctgaatgctgagttacactcatg 504
Query: 304 cccttgtgagctccacttgctctgacagactcactcactcaagtttcctgtgccctcaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 cccttgtgagctccacttgctctgacagactcactcactcaagtttcctgtaccctcaat 564
Query: 364 agcctgttagtccagtacttgttaaaatattgatgagcttcagagccctaatgacccagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcctgttagtccagtacttgttaaaatattgatgagcttcagagccctaatgacccagt 624
Query: 424 tcctctcaaacaccctgcctctgaaccctgctgcattagggaccaagccctccatacatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctctcaaacaccctgcctctgaaccctgctgcattagggaccaagccctccatacatg 684
Query: 484 gggtcaggggcaggggtattaaaggcccaaactataagagacttccataaggaaagtctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtcaggggcaggggtattaaaggcccaaactataagagacttccataaggaaagtctc 744
Query: 544 tcccatgctttcta 557
|||||||| |||||
Sbjct: 745 tcccatgcattcta 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_e15.g1 MSMg01no347_e15.g1 CHROMAT_FILE:
MSMg01no347_e15.g1 PHD_FILE: MSMg01no347_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:13 2005
(537 letters)
>mm_chr5_106164506_106165442
Length = 937
Score = 1023 bits (529), Expect = 0.0
Identities = 535/537 (99%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 1 taggcatgcatgagcacagacaatctacacagagctaaatcaaacctacgacttcgtaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taggcatgcatgagcacagacaatctacacagagctaaatcaaacctacgacttcgtaca 545
Query: 61 tgatacgcaagcatgctaccaactaagctacaccctcgctcccatcttgggactgttaca 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 544 tgatacgcaagcatgctaccaactaagctacaccctcgct-ccatcttgggactgttaca 486
Query: 121 aaaatattttatgtgttactgttaaggcagatgagcttgcccttgtgctccacatggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaatattttatgtgttactgttaaggcagatgagcttgcccttgtgctccacatggggg 426
Query: 181 cttctcagcactcaggagagtaggggatgcaagacggcatacacggaagaagcgcacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttctcagcactcaggagagtaggggatgcaagacggcatacacggaagaagcgcacacc 366
Query: 241 ccagtttgaactgattacatcctcagacataaaccagtcttttgtattgattgattgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccagtttgaactgattacatcctcagacataaaccagtcttttgtattgattgattgact 306
Query: 301 gactgattttctgagacagggtttctcggtgcagctgccctggctgtgttagaactcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gactgattttctgagacagggtttctcggtgcagctgccctggctgtgttagaactcaca 246
Query: 361 gagatctgcctgcataccccaagtatggactaattacatcctgagatacaaaccagtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagatctgcctgcataccccaagtatggactaattacatcctgagatacaaaccagtctt 186
Query: 421 atttattaactaattaatatttatttgtttatttattttccaaaacagggtttctctgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atttattaactaattaatatttatttgtttatttattttccaaaacagggtttctctgtg 126
Query: 481 caactgccctgactgtcctggaactcatacagatctgtccatacaacacaggtataa 537
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 125 caactgccctgactgtcctggaactcatacagatctgtctatacaacacaggtataa 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
