Query= MSMg01no347_g02.b1 MSMg01no347_g02.b1 CHROMAT_FILE:
MSMg01no347_g02.b1 PHD_FILE: MSMg01no347_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:20 2005
(291 letters)
>mm_chr5_148805040_148805730
Length = 691
Score = 509 bits (263), Expect = e-148
Identities = 284/291 (97%)
Strand = Plus / Plus
Query: 1 atggtgttgaaaataattgtaacatagggaacaaaaaaacctaatgggatatagtaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtgttgaaaataattgtaacatagggaacaaaaaaacctaatgggatatagtaatag 260
Query: 61 aaaaacaggaatcacaatttcacataacaaaatgactttgttcaacatgtataaaaaaga 120
||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaatgggaatcacaattttatacaacaaaatgactttgttcaacatgtataaaaaaga 320
Query: 121 aaacaaaactaaaactccctataatcatagatatttcccagtggggtgaacatttctgtt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaaactaaaactccctataataatagatatttcccagtggggtgaacatttctgtt 380
Query: 181 tttatctttcttttatcttctgtttctcaagcacgctgacatttttatttgttttataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatctttcttttatcttctgtttctcaagcacgctgacatttttatttgttttataat 440
Query: 241 ttttataatatttttatacagtgtttgtttgttgtttagtttggtcttttg 291
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttataataattttatacagtgtttgtttgttgtttagtttggtcttttg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no347_g02.g1 MSMg01no347_g02.g1 CHROMAT_FILE:
MSMg01no347_g02.g1 PHD_FILE: MSMg01no347_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:20 2005
(271 letters)
>mm_chr5_148982321_148982995
Length = 675
Score = 472 bits (244), Expect = e-137
Identities = 266/276 (96%), Gaps = 6/276 (2%)
Strand = Plus / Minus
Query: 1 atcctaaaactataatatgatttgaaagtagagggctgtgtgtggagaaagatgagatct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 atcctaaaactataatatgatttgaaagtagagggctgtgtg-ggagaaagatgagatct 417
Query: 61 gaagggaagtagggagggacaagagagggcac-----gggggggggatgctatacaaatg 115
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 416 gaagggaagtagggagggacaagagagggcacggggggggggggggatgctatacaaatg 357
Query: 116 tcacatgctttctactacatgtgaaatatagagagatgcataaacaacatgtaaatagat 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcacatgctttctactacatgtgaaatatagagagatgcataaacaacatgtaaatagac 297
Query: 176 ggtgaattgtgtgagagccaagaaagggtaacggggcacaagtggtggccctgatttcca 235
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 ggtgaattgtgtgagagccaagaaagggtaatggggcacaagtggtggccctgatttcca 237
Query: 236 aagtccagagaataacatacatggatggaaatataa 271
||||||||||||| ||| ||||||||||||||||||
Sbjct: 236 aagtccagagaatgacacacatggatggaaatataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 675
Length adjustment: 9
Effective length of query: 262
Effective length of database: 666
Effective search space: 174492
Effective search space used: 174492
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
