NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCCCCTCTGAGCCCCATTTTTAAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTGGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGC
ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAC
ACTGTCTTTTTTCCACTGGATGGTTATAGCTCCCTTTTCAAAGATCAAGT
GACCATAGGTGTGTGGATTCATCTCTGGGNCTTCAATTCTGTTCCATTGG
TCCACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGTATACCATTGT
CCTGTTTCACTCTTTTACGTTCCGTTTTGTTGATTCCTCCTCATGTCTTT
TTATTCTTTACATCAGTTTTTTGCTTCCTCCTTTTTTTTTTTTCN

NTTTNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACATGCCCTTGCCAG
TTCCCAGATGTTAAAGCCAGCTACTTATAGATATATTTTGGTAAGCTTAT
TGACAAGTGATTAAACTGTATTATTGGAGAAGGTGTAAATACTGGGAGTG
ATTCTGATGACAACCCACAGGCACTCCCATTTAATTATCTTCTTAGTCAT
TTCAGAATATAAAGGCCAATCTCTTGTATATTGTTAGTCATCATAGATTG
AAGATACACTTAGGCTTTGAACCACAAAATGATATACGTTTCACTTTATC
TTTTCTGAAGTACAAAACAACCCCCCAGGTTAAACATGTTGATGGATGTT
ATTTAAGTCACCAAAGTTGTTTTTTAGTTTGTTTTATTTTTTCTTTATTG
GATATTTTCTTTATTTACATCTCAAATGGAAAGGAAGCCCTTTCCAGGTC
TCCCCTTCAGAAAACCCCTATCCCATCCCCGTTCTCCCTGCCTCTATAAG
GGTTCTTCCCTCCCACCCACCCATTCCCATCTTCCTGCATTGGCATTTCC
CTACATTGGGGACACTGAACACCTTCANGCCCAAGCGCCTGTCCTTTCAT
TGATGTCCAACAAGCCCTCCTCTGCTAAAAATGCACCCAGGCCATGGGGA
CCTCCATGGGGATTCTTTTGTTGGTGGCCCCGCCCCCACACCTC

Query= MSMg01no347_g15.g1 MSMg01no347_g15.g1 CHROMAT_FILE:
MSMg01no347_g15.g1 PHD_FILE: MSMg01no347_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:23 2005
         (508 letters)



>mm_chr5_41561652_41562559
          Length = 908

 Score =  897 bits (464), Expect = 0.0
 Identities = 497/508 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcacatgcccttgccagttcccagatgttaaagccagctacttatagatatattttgg 60
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctcatgcccttgccagtgcccagatgttaaagccagctacttatagatatattttgg 260

                                                                       
Query: 61  taagcttattgacaagtgattaaactgtattattggagaaggtgtaaatactgggagtga 120
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 261 taagcttattgacaagtgattaagctgtattattggagaaggtgtaaatactgggaatga 320

                                                                       
Query: 121 ttctgatgacaacccacaggcactcccatttaattatcttcttagtcatttcagaatata 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 321 ttctgatgacaacccacaggcactcccatttaattatcttcttattcattttagaatata 380

                                                                       
Query: 181 aaggccaatctcttgtatattgttagtcatcatagattgaagatacacttaggctttgaa 240
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggccaatcacttgtacattgttagtcatcatagattgaagatacacttaggctttgaa 440

                                                                       
Query: 241 ccacaaaatgatatacgtttcactttatcttttctgaagtacaaaacaaccccccaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaaaatgatatacgtttcactttatcttttctgaagtacaaaacaaccccccaggtt 500

                                                                       
Query: 301 aaacatgttgatggatgttatttaagtcaccaaagttgttttttagtttgttttattttt 360
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aaacatgatgatggatgttatttaagtcaccaaagttgttctttagtttgttttattttt 560

                                                                       
Query: 361 tctttattggatattttctttatttacatctcaaatggaaaggaagccctttccaggtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttattggatattttctttatttacatctcaaatggaaaggaagccctttccaggtct 620

                                                                       
Query: 421 ccccttcagaaaacccctatcccatccccgttctccctgcctctataagggttcttccct 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ccccttcagaaaacccctatcccatccctgttctccctgcctctataagggttcttccct 680

                                       
Query: 481 cccacccacccattcccatcttcctgca 508
           ||||||||||||||||||||||||||||
Sbjct: 681 cccacccacccattcccatcttcctgca 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)