BAC Information

Click to search

BAC

Clone NameMSMg01-347K14
Chromosome5 (Build37)
Map Location 82,212,580 - 82,212,945
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347K14.T7 (MSMg01no347_k14.b1)MSMg01-347K14.TJ (MSMg01no347_k14.g1)
ACCAG459949AG459950
length773876
length of high quality
(start - end)
371 (49 - 419)---
definitionCHROMAT_FILE: MSMg01no347_k14.b1 PHD_FILE: MSMg01no347_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:42 2005CHROMAT_FILE: MSMg01no347_k14.g1 PHD_FILE: MSMg01no347_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTCTGTACCTCTTTCACTTCCAATACTTATCATTTTCCCTT
TATGTTCTGGGACTTCTTATAAGATAAACAATAATAAAAAGTCTAAAATA
TTGAGCCATCACCTTCTTGTTTATACAGAATTATTTCAAAGTTGTTTGTT
ATTTACTGCATAGCTTCTTTTGCATTACTATAAAAATATTTTAACATTAT
AGCGCAATAAATATTTGATGTTTTTATGTTCACTTGTGTTGTGTGTGCAG
TATATGTGTGTTTGTGTGTGTGTGTCTACATGTGCGTGTGTGAAGGAAGG
CCAGAGCAAGTGGTTATCACATCTCTTTCTCTGTGATTTTCCATCTTTTT
AGGGTAGGGGTAAGTGCGCACATAAAAACCGTGATCATTTTACAGCATTT
TCTTTTATTTTGAAAATTTCGCTAGCAACATCTACTTTTCTTCCCTTTCT
CCTCCCTCCTCTCTTTTACCCCCACAATGCTATCCCTTATACTTCTTGGC
TCCTATTTTCTTTATTTGTTGTTCCTATACTTACTACACTTCACTTTATT
GCCCTTTTTACCCTTCCTGTTCCCCTTTTTTTTCCTACTCCCCCCCCCCC
CTTTTTTATTTTCCTCCCCTTCCCATTTTATTATCCCCCCCCCCCCTTTT
TTATCCCCTTCCTCTTTTCCCCCCTCCTTCCCCCCCTTTCCTCCCTAATA
TTCCACTCTCTATTATTCCCCCC
NCCCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAGAATGAAGAGGGAA
CTATTTGAGGGTTTGGAGGCGAGGAAAGCGAAGGGGAGGATGTTCCNCCC
CCCTCCCCTCCCCCCCTCCCCTTTCCCCCCCCCCTCTCCTCCCCCCCCCC
TTCTCTTTCTTCTTTCTCTCCTTCCTCTCTCTCCCCTTCCCCCCCCCCCC
CTCCCCCCCCTCTTCCCTTCTTTCCCCCCCCTTCTCCCTTCTCTTCTCCC
CCCCCCTTCCCCCCTCCCCCCCCCTTTTTTCTCCCCCTCCCTTCCCCCCC
CCCTCCTTTCCCCCTCTCCCCTTCCCCCTCCCTCTCCCCCTTTCTCTCCC
CCCCCCCCCTTTCCTTCCTCTTTTTTTTTCCCCCCCCCCCCCCCCCCCTC
CTTCCCTCTCCCCCTTTTCCCCCCTTCCTCTCCCCCTCCCCCCTTTCCCC
CTCTCCCCCCTTTTCTTTCCCCCCCCCCCCTTCTCCCCCCCTTCTTTCCC
CCCTCTCCCTTCCCCCCCTCTTTCTCCCTTTCCCTCCCCCCCCCCTCTCT
CTCTCTCTTCCCCCTCCCCTCCCCCCTCCCTCTCCCCCCTCCTCTCCTCC
CTTCTTTCCCCCCCCCCCCCCCCCTTCTCCCCTCCTCTCTCTCTCCTCCC
CCCTCTCCTCCTTTTCCCCTCCTCCCTCCCCTTCCCTTTCTTCCCTCCCC
CCCTTTTTCCTCTTCCCCTCCCCCCCCTTTCTCTCTCCCCTCTCCCCCTC
CTCCTCTCCCTCCTTCTCTCCCCCTCTTTCTNCTCCCCCTCTCTTTCTCT
TCCCCCCCCCCCTCTCTCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_k14.b1 MSMg01no347_k14.b1 CHROMAT_FILE:
MSMg01no347_k14.b1 PHD_FILE: MSMg01no347_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:42 2005
         (371 letters)



>mm_chr5_82212376_82213146
          Length = 771

 Score =  665 bits (344), Expect = 0.0
 Identities = 360/366 (98%), Gaps = 2/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctgtacctctttcacttccaatacttatcattttccctttatgttctggga 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctgaagttctttcacttccaatacttatcattttccctttatgttctggga 264

                                                                       
Query: 65  cttcttataagataaacaataataaaaagtctaaaatattgagccatcaccttcttgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcttataagataaacaataataaaaagtctaaaatattgagccatcaccttcttgttt 324

                                                                       
Query: 125 atacagaattatttcaaagttgtttgttatttactgcatagcttcttttgcattactata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacagaattatttcaaagttgtttgttatttactgcatagcttcttttgcattactata 384

                                                                       
Query: 185 aaaatattttaacattatagcgcaataaatatttgatgtttttatgttcacttgtgttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaatattttaacattatagcgcaataaatatttgatgtttttatgttcacttgtgttgt 444

                                                                       
Query: 245 gtgtgcagtatatgtgtgtttgtgtgtgtgtgt--ctacatgtgcgtgtgtgaaggaagg 302
           |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||
Sbjct: 445 gtgtgcagtatatgtgtgtttgtgtgtgtgtgtgcctacgtgtgcgtgtgtgaaggaagg 504

                                                                       
Query: 303 ccagagcaagtggttatcacatctctttctctgtgattttccatctttttagggtagggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagagcaagtggttatcacatctctttctctgtgattttccatctttttagggtagggg 564

                 
Query: 363 taagtg 368
           ||||||
Sbjct: 565 taagtg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)