Query= MSMg01no348_b07.b1 MSMg01no348_b07.b1 CHROMAT_FILE:
MSMg01no348_b07.b1 PHD_FILE: MSMg01no348_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:15 2005
(529 letters)
>mm_chr5_139374725_139375652
Length = 928
Score = 907 bits (469), Expect = 0.0
Identities = 499/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 21 atatcttcgccctgaggaaccccttgctttggtggtcggcagtcctgtctgctagtgcca 80
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 221 atatcttcaccctgaggaaccccttgctttggtggtcggcagccctgtctgctagtgcca 280
Query: 81 ttctagctgaggtagagtaagctccatgggtaggctcgggggtccagtctaccagtgtct 140
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 281 ttctagctgaggtagaataagccccatgggtaggctcaggggtccagtctaccagtgtct 340
Query: 141 gtaagtaaaggttcctattgagccagggtttctgaggccatgagtactagacatcgccct 200
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 341 gtaagtaaaggttcctattgagccagggtttctggggccatgagtactagccatcgccct 400
Query: 201 ccagggtgactgcccatgggcacttatcagtcaagggatgccttcatgagtccgagctca 260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 401 ccagggtgactgcccatgggcacttatctgtcaagggatgccttcatgagtccgagctca 460
Query: 261 tagactatcccatccgacaaggggaaaaaaaaagcaaggtgtctattcaaagcctcagag 320
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagactatcccaaccgacaaggggaaaaaaaaagcaaggtgtctattcaaagcctcagag 520
Query: 321 ttggcaagactcaagcttggaccctgaagagcttgcagttactcctgtggagacccaggg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttggcaagactcaagcttggaccctgaagagcttgcagttactcctgtggagacccaggg 580
Query: 381 agggcacatggtctctgcagatgttttgagtagaatggagctgaggaagagaagggagta 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agggcacatggtctctgcagatgttttgagtagaatggagctgaggaagagaagggagta 640
Query: 441 gctgcaggagccattacagatgagtgacagagcctggaagatactgagcagaagacagag 500
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gctgcaggagccat-acagatgagtgacagagcctggaagatactgagcagaagacagag 699
Query: 501 ccccaggcctcaggctggcatctcctcca 529
|||||||||||||||||||||||||||||
Sbjct: 700 ccccaggcctcaggctggcatctcctcca 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_b07.g1 MSMg01no348_b07.g1 CHROMAT_FILE:
MSMg01no348_b07.g1 PHD_FILE: MSMg01no348_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:15 2005
(440 letters)
>mm_chr5_139562964_139563803
Length = 840
Score = 779 bits (403), Expect = 0.0
Identities = 430/439 (97%)
Strand = Plus / Minus
Query: 1 tgatggcagagtcttaattctaacgtttcaagcatttccgtggctgagttcttgaagata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 639 tgatggcagagtcttaattctaacgtttcaagcatttccatggctgagttcttgaagata 580
Query: 61 ggcaaggggcctcaggctggtttaaatccccacctttacctgtgcctccccattctcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggcaaggggcctcaggctggtttaaatccccacctttacctgtgcctccccattctcccc 520
Query: 121 tcatcctgtggctttgcatttctcctggtatctggagaatgtgaaactctggtttgctgt 180
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 519 tcatcctgtggctttgcatttctcctggtatctggagaatgtggaattctggtttgctgt 460
Query: 181 cccagctccctgtcagagacctggggcagggcccctctccctgcaggagcatataggagg 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cccagctccctgccagagacctggggcagggcccctctccctgcaggagcatataggagg 400
Query: 241 agatttgggagggagtagctgcctgggggaggtcacgccactttctcattcccaaattaa 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 399 agatttgggagggagtagctgcccgggggaggtcacgccactttctcattcccaaattaa 340
Query: 301 aaatgtgtggtgaatgaatcacggggcctttggtctttatccatccccacattatttata 360
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 339 agatgtgtggtgaatgaatcacggggcctttagtctttatccatccccacattatttata 280
Query: 361 gaaactggaagacaagaggactgtctccagtcacctctacagggctcatgtccccttgtc 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 gaaactggaagacaagaggactgtctccagtcacctctacagggttcatgtccccttgtc 220
Query: 421 ccaaggtaggatttgtatg 439
|||||| ||||||||||||
Sbjct: 219 ccaaggcaggatttgtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
