Query= MSMg01no348_b21.b1 MSMg01no348_b21.b1 CHROMAT_FILE:
MSMg01no348_b21.b1 PHD_FILE: MSMg01no348_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:18 2005
(557 letters)
>mm_chr5_72171175_72172131
Length = 957
Score = 1023 bits (529), Expect = 0.0
Identities = 547/553 (98%)
Strand = Plus / Plus
Query: 5 gaattcattagctccagatgtattgggcatagactttgctccacttcagagatcattctt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagctccagacgtattgggcatagactttgctccacttcagagatcattctt 264
Query: 65 aaacatccaggagacaaagtgcttatttcttccagtttcaggagttgttacgccgtatgg 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 265 aaacatccaggagacaaagtgcttatttcttccagtctcaggagttgttacgcagtatgg 324
Query: 125 gcaggtctttatcatgccagtgaatcagtgtgtccattcctgtgcccatgtgcatgttgc 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gcaggtctttatcatgccagtgaatcagtgtgcccattcctgtgcccatgtgcatgttgc 384
Query: 185 aaggatatctgcttgattgtgaatctgggcatgcaacaataggcattttatccaagtacg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggatatctgtttgattgtgaatctgggcatgcaacaataggcattttatccaagtacg 444
Query: 245 tgcttttccatttatcttcatcatggaggcacagaattgaatttctgcccagattcctgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 tgcttttccatttatcttcatcatggaggcacagaattgaatttctgcccagattcccgg 504
Query: 305 catgtgacttctctttttctattagtttgcgacatcagggacagattttctgttttcaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgtgacttctctttttctattagtttgcgacatcagggacagattttctgttttcaaa 564
Query: 365 cagtcatgatattttaataagactcctgagacacatttttttaattcccctccatgctgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagtcatgatattttaataagactcctgagacacatttttttaattcccctccatgctgt 624
Query: 425 cttcaagtttcatttttgaagccatgacctacttacatggttcaaaaggcctcatgcaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcaagtttcatttttgaagccatgacctacttacatggttcaaaaggcctcatgcaag 684
Query: 485 atgaaaatacagatcaccttgtcaacgataagggggcagggccacggcactacactgtca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgaaaatacagatcaccttgtcaacgataagggggcagggccacggcactacactgtca 744
Query: 545 ccagctacaccct 557
|||||||||||||
Sbjct: 745 ccagctacaccct 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_b21.g1 MSMg01no348_b21.g1 CHROMAT_FILE:
MSMg01no348_b21.g1 PHD_FILE: MSMg01no348_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:18 2005
(493 letters)
>mm_chr5_72353295_72354191
Length = 897
Score = 849 bits (439), Expect = 0.0
Identities = 478/493 (96%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 5 aggggcgaaagaatggaattttgcttgatgatatttttgactcttggctgtactttattt 64
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aggggtgaaagaatgaaattttgcttgatgatatttttgactcttggctgtactttattt 638
Query: 65 gtagaaatctacttaactagttaatctttgctcttgtctaaactctatttcaaaatgaag 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtagaaatctacttaactagctaatctttgctcttgtctaaactctatttcaaaatgaag 578
Query: 125 acaccctcaccaatctgtccttcctccccttgtagtgtctattctgctag----gggagc 180
|||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 577 acaccctcaccaatctgtccttcctcccgttgtagtgtctagtctgctagctttgggagc 518
Query: 181 ctggcagtgtgtgtcagattgtaggacttcaagtttcttctgcctcacttgctttttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctggcagtgtgtgtcagattgtaggacttcaagtttcttctgcctcacttgctttttttt 458
Query: 241 tttttaaagcaaaatttctgtctcctcttaattatgacaattttatccaatatattttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttttaaagcaaaatttctgtctcctcttaattatgacaattttatccaatatattttga 398
Query: 301 tcatgtttttccccatttctcagatccccatatctccccacctctccagttacatgtttt 360
||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 397 tcatgctcttccccatttctcagatccccatatctccccacctccccagttacatgtttt 338
Query: 361 ctctctctcaaaacaaaactaaaacaaacaacaaaataccccctcacacacaaaccaaac 420
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 ctctctttcaaaacaaaactaaaacgaacaacaaaataccccctcacacacaaaccaaac 278
Query: 421 aaggcaaaatgccacagcaaaacataaagaaaccaagaaacctcccccaaaaaacccaca 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacgcaaaatgccacagcaaaacataaagaaaccaagaaacctcccccaaaaaacccaca 218
Query: 481 tggagtttgtttt 493
|||||||||||||
Sbjct: 217 tggagtttgtttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 897
Length adjustment: 10
Effective length of query: 483
Effective length of database: 887
Effective search space: 428421
Effective search space used: 428421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
