BAC Information

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BAC

Clone NameMSMg01-348E12
Chromosome5 (Build37)
Map Location 122,607,596 - 122,849,320
singlet/doubletdoublet
Overlap genePpp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3
Upstream genePtpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63
Downstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348E12.T7 (MSMg01no348_e12.b1)MSMg01-348E12.TJ (MSMg01no348_e12.g1)
ACCAG460416AG460417
length752761
length of high quality
(start - end)
244 (62 - 305)455 (69 - 523)
definitionCHROMAT_FILE: MSMg01no348_e12.b1 PHD_FILE: MSMg01no348_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:31 2005CHROMAT_FILE: MSMg01no348_e12.g1 PHD_FILE: MSMg01no348_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,607,596 - 122,607,839)(122,849,028 - 122,849,320)
sequence
GCGGCCGCTAAACGACTCACTTTCTAAAGAGGATCCGCGGAATTCTCCCT
TTCTCTCTCTAAAATGTAAAAGAGCATTAGCGCACACAAGAAGCTCACAC
AAATTACTTAATGTGCCACTCACAGTGGATTAACATTTTTTTGGCTTATC
TTGGGGGCTTCTTTTTTCCAAATATTGGATCGTAGATGCTTTATTGCAGT
ATTATGAAATTTTGCCAGTGCTGGGAATTGAACCCAAGGTCTCACACATA
CTCGACAAGCATTCTCACCACGGAGCCGTATATCTAGCTCTTCTTGTTCA
CCAATGTTTCTTAGTATTTGAATCCCCAACGTTCCAACCTCCTCCTCTTT
ATGATTCTCCACAGGCAAGCAACCCCACCCCAGATTGGCTCCGAGGGGTG
ATTCAGTGTTGAACTCCCACCCCGCCATGTCGGTCAGACTTCTGTCCCCA
AGCAGCAGAGCCGGAAGGAGCTGGTGAGCCTCGCAGCGCGCAGCAGACTG
ACAAAGTCCATCTTCAACTTGCGCGCGCCAACTTCACAACTTCCCTCTCC
CGCCACAGGGGGTCCTATTTCCCCCGCCCGCTTGGTGGATTGATCCCGCG
CGCGTTGGTGGAGTCTTGTTTAACCGTCCCCGCCCGGGGTTCCGCCTCAC
TCTCCGTCTTATGCGTTCCAATCTCCGGCTCCTTCTCGTCGCCTGCCTCT
GCCCCCTTTCCCCGTGTTCCTTTTTTCCCCCTTTAGTACCTTCCCTTTTT
TN
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAATGCCCTCTTTGGCTTCTGTGGACACCAAG
CACAAATATGGTACATATACATCCTGACGGGCAAACATTCACACACACAA
AATAAAATAAATTCTCTTGTATTTTTGATTTTTTGAAATAGGTTTTCTCT
GTGTAGCCCTGGCTTTCCTGGAACTGACTTTGTAAACCAGGAGCCTCAAA
CTCACAGAGATTCATCAGCCCCTGCCTCTGCCTCTTGAGTGCTGGGATGA
AAGGTGTGCCCTACAACTGTCCAACTTAAGATATATACATACATACATAC
ATACATACATACATACATACATACATATATATATTAAAATCAAAAAACTA
AGCATGCTTTTTTAAAAACCTGACAACAAATGTTAGAGAGGATGTGGGGG
AAAGGGAAGCCTGATCGGCTGGTAGTCAAAGTGCAAATTAACATGGCCAT
TGTGGAGATCGGTTTGAAGGGTCCTCACATGATTAAAAATATACTTCCCA
TATGATCCAGCTATTTTACTCCTGGGCATATACCCAAGGCCTCCTGCCCT
GCCACAGTCCTATCTACAAATCTGCATTTATTGCTACTTTATTCTCCCAT
TCCAATACAAGTAACCCACCTTATTTGTTCCCCTTCTAAATAAACAGCAC
CCCGCAAACTGTATCTTCCCTTACTATAATAAAACATCCCCAATGTTCTC
TGAAAGGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_e12.b1 MSMg01no348_e12.b1 CHROMAT_FILE:
MSMg01no348_e12.b1 PHD_FILE: MSMg01no348_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:31 2005
         (244 letters)



>mm_chr5_122607396_122608039
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtaaaagagcattagcgcacacaagaagctcacacaaattacttaatgtgccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgtaaaagagcattagcgcacacaagaagctcacacaaattacttaatgtgccactc 260

                                                                       
Query: 61  acagtggattaacatttttttggcttatcttgggggcttcttttttccaaatattggatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 acagtggattaacatttttttggcttatcttgggggcttcttttttccaaatattgtatc 320

                                                                       
Query: 121 gtagatgctttattgcagtattatgaaattttgccagtgctgggaattgaacccaaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagatgctttattgcagtattatgaaattttgccagtgctgggaattgaacccaaggtc 380

                                                                       
Query: 181 tcacacatactcgacaagcattctcaccacggagccgtatatctagctcttcttgttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacacatactcgacaagcattctcaccacggagccgtatatctagctcttcttgttcac 440

               
Query: 241 caat 244
           ||||
Sbjct: 441 caat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no348_e12.g1 MSMg01no348_e12.g1 CHROMAT_FILE:
MSMg01no348_e12.g1 PHD_FILE: MSMg01no348_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:31 2005
         (455 letters)



>mm_chr5_122849017_122849871
          Length = 855

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgccctctttggcttctgtggacaccaagcacaaatatggtacatatacatcctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caatgccctctttggcttctgtggacaccaagcacaaatatggtacatatacatcctgac 245

                                                                       
Query: 61  gggcaaacattcacacacacaaaataaaataaattctcttgtatttttgattttttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gggcaaacattcacacacacaaaataaaataaattctcttgtatttttgattttttgaaa 185

                                                                       
Query: 121 taggttttctctgtgtagccctggctttcctggaactgactttgtaaaccaggagcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 taggttttctctgtgtagccctggctttcctggaactgactttgtaaaccaggagcctca 125

                                                                       
Query: 181 aactcacagagattcatcagcccctgcctctgcctcttgagtgctgggatgaaaggtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aactcacagagattcatcagcccctgcctctgcctcttgagtgctgggatgaaaggtgtg 65

                                                                
Query: 241 ccctacaactgtccaacttaagatatatacatacatacatacatacatacata 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ccctacaactgtccaacttaagatatatacatacatacatacatacatacata 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)