Query= MSMg01no349_b11.b1 MSMg01no349_b11.b1 CHROMAT_FILE:
MSMg01no349_b11.b1 PHD_FILE: MSMg01no349_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:36 2005
(553 letters)
>mm_chr5_34941368_34942321
Length = 954
Score = 358 bits (185), Expect = e-103
Identities = 194/197 (98%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 5 gaattcctatgttctgcccttcttccaatagataaatattttttaatgttttattttact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatgttctgcccttcttccaatagataaatattttttaatgttttattttact 264
Query: 65 ttttgattac-aaaaaaagggcagatagtacctcaaaaaggacatccaaggctgatctct 123
|||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ttttgattacaaaaaaaaaggcagatagtacctcgaaaaggacatccaaggctgatctct 324
Query: 124 ggcttctatatgctttccccacacaagtgtgcccttacccctatatgcacatacacaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcttctatatgctttccccacacaagtgtgcccttacccctatatgcacatacacaaaa 384
Query: 184 ttaagaataggaaaaaa 200
|||||||||||||||||
Sbjct: 385 ttaagaataggaaaaaa 401
Score = 286 bits (148), Expect = 2e-81
Identities = 154/156 (98%)
Strand = Plus / Plus
Query: 398 aataggaaaaaaaaatcaactctctggtttttgctctgtttactgctatagctggcaatg 457
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 390 aataggaaaaaaaaatcaactctctagtttttgctctgtttactgctgtagctggcaatg 449
Query: 458 ggacctgggaggatggagccgataaatgaggcagactagagtctcatgcagtagccagta 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggacctgggaggatggagccgataaatgaggcagactagagtctcatgcagtagccagta 509
Query: 518 gacatttatttagagcattggacaatttatcctctg 553
||||||||||||||||||||||||||||||||||||
Sbjct: 510 gacatttatttagagcattggacaatttatcctctg 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_b11.g1 MSMg01no349_b11.g1 CHROMAT_FILE:
MSMg01no349_b11.g1 PHD_FILE: MSMg01no349_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:36 2005
(480 letters)
>mm_chr5_35102412_35103291
Length = 880
Score = 826 bits (427), Expect = 0.0
Identities = 453/477 (94%), Gaps = 24/477 (5%)
Strand = Plus / Minus
Query: 4 tcagcatgggctgtatcagaacttgtctcaaaagaaaaaggaaaaggaaaaagccaagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tcagcatgggctgtatcagaacttgtctcaaaagaaaaaggaaaaggaaaaagccaagca 821
Query: 64 gtgatagaacacacctttaatctcagcagtctggaggcagaggcaggcagatctctgagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gtgatagaacacacctttaatctcagcagtctggaggcagaggcaggcagatctctgagt 761
Query: 124 tataggtcagcctgttctacaaagtgagttccaggacagccagagctacatagaaaccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tataggtcagcctgttctacaaagtgagttccaggacagccagagctacatagaaaccct 701
Query: 184 gtctcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaccgttccggcttcag 243
|||| ||||||||||||||||||||||||||||||||
Sbjct: 700 gtct------------------------caaacaaacaaacaaaaccgttccggcttcag 665
Query: 244 aaaaagctgtctggaggtgatccatgcagtgagaaacccaatgaagcttcaggctacctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaaaagctgtctggaggtgatccatgcagtgagaaacccaatgaagcttcaggctacctg 605
Query: 304 taagaatcaaatgccctattccatggccataaggcactccattttctcgaaatggccaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taagaatcaaatgccctattccatggccataaggcactccattttctcgaaatggccaag 545
Query: 364 tatacagaaaccaacactgttactgtaggggtataagcccgccgctgttaaactgggaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatacagaaaccaacactgttactgtaggggtataagcccgccgctgttaaactgggaag 485
Query: 424 gagagcagagaaacagcctttagattctatgtcccctctgttactaatggcactatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagagcagagaaacagcctttagattctatgtcccctctgttactaatggcactatt 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
