XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGT
GACTGTCTATCATAGTGGAAGGAGTCACAGCAGCAGGAGCTTGAAGGAGC
TGAGCCTATTGTAAACTCAGTCAAGAAAAAGAGAGAGCAATGACTACGTG
CTGTTCCGATCACCCATGTTTACTGATGCTCTATTCACATTAGCCAAGAA
ACATAACCAGCCTGGATGTCCATCAACAGACAAGTGAATGAAAAATATGA
GGCCAGGGAGATGGTTTAGGGGGTAAAGGTGCTTGTTACGAAGTCTAGTG
ACCTCAGTGCAATCCTCAGGGACCACATGGTGACAGGAGAGAGCAGATTG
CCACAAGCTGTCCTCTGACTCACACATGGATACTTACCCCCAAGATAAAA
ATAAGTAAATGTTAAATTTAAAACCATGATTATATGTATGTGTGTGTATA
TGTGTGTATATATATATATATATATATACACATATATATATGTATGTATA
TACACAGTATATATATATATATGTATGTATATATACAGGAGAGTAAAGTT
TAAATATATATGTATGTGTATCATAAACATGTATGTGTGTATATGTGTGT
ATATATATGTATATATATATATATATGTATATGNATATGNNCNTNNNNAN
ANATNNNTTTTTTTNNNNTAAAATTTTTTATTTTAAATATAAATTCTTAA
CTTTTTTTATTATAAATTTTTNNTTTTTTTAATTTTTTATTAAATATATT
ATTTTTATTAAAAA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGTAGATTTTCACAGTTTGGTTCTAG
TTGATTCTGACAGTATCAGGTGACATACTTCTACACACTTCCATATTTCT
TATAGACAGAGGTTGGAACCATGAGTTAAGTCTGACTCAGGTTCATCAGG
GTTGGTAGACTGCAATTTGCTTTGTGTTGCATTTCATCGGGGCCCATTTT
GCTGTGCTAAAATTCAGATATAGATTGAAATGGAGCAAATCAGTCTCAGT
AGCTGATTGTCTTTCTAAGGTAGGATTCCAGCACTGATGCTCAAAGCTTA
TTTTAGCCAATTATTTTCAATCAGAGCTTTAAAACATTTTTCTAGATTTA
TAGTTCTTTTTTAAAATTTGCAAGCTAGGATTAGTCTGTAAATAAATTTT
CTTGGTGGTTTCTTTACCACCAAGAGCTACTTGTTTTCTGTGCCGTGCAA
TTTGGACAAGAGATACAAGACAAATATTTACTTCTAATGTCCAGAGAANA
CAGTTACTGCCCAAGTTACATCCTGTGATAGCTACTAAGGTCATTTCTTC
TTCCGCTTCTCCCTCCTTCCCTCCTCCTCCTCCTTGGCCTTCTTCCCCTT
TGGTTCTTCTTCCGTTTTTTCCCCTCCCAATTTCTCTTTATTTCAATTCA
TTTTTCAATTTTATTTTCCCTATTAAAAACCGGAACCCCCTCCTGAAAAA
GAAAAAAAAAGAAAGTTTATTTGTTTCCCCTT

Query= MSMg01no349_b15.g1 MSMg01no349_b15.g1 CHROMAT_FILE:
MSMg01no349_b15.g1 PHD_FILE: MSMg01no349_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:37 2005
         (469 letters)



>mm_chr5_39436747_39437616
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtagattttcacagtttggttctagttgattctgacagtatcaggtgacatacttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 catgtagattttcacagtttggttctagttgattctgacagtatcaggtgacatatttct 260

                                                                       
Query: 61  acacacttccatatttcttatagacagaggttggaaccatgagttaagtctgactcaggt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 261 acacacttccatatttcttatagacagaggttggaaccatgagttaggtctgactcaggc 320

                                                                       
Query: 121 tcatcagggttggtagactgcaatttgctttgtgttgcatttcatcggggcccatttt-g 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tcatcagggttggtagactgcaatttgctttgtgttgcatttcatcggggcccatttttg 380

                                                                       
Query: 180 ctgtgctaaaattcagatatagattgaaatggagcaaatcagtctcagtagctgattgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgctaaaattcagatatagattgaaatggagcaaatcagtctcagtagctgattgtc 440

                                                                       
Query: 240 tttctaaggtaggattccagcactgatgctcaaagcttattttagccaattattttcaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctaaggtaggattccagcactgatgctcaaagcttattttagccaattattttcaat 500

                                                                       
Query: 300 cagagctttaaaacatttttctagatttatagttcttttttaaaatttgcaagctaggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagctttaaaacatttttctagatttatagttcttttttaaaatttgcaagctaggat 560

                                                                       
Query: 360 tagtctgtaaataaattttcttggtggtttctttaccaccaagagctacttgttttctgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtctgtaaataaattttcttggtggtttctttaccaccaagagctacttgttttctgt 620

                                                             
Query: 420 gccgtgcaatttggacaagagatacaagacaaatatttacttctaatgtc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccgtgcaatttggacaagagatacaagacaaatatttacttctaatgtc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)