BAC Information

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BAC

Clone NameMSMg01-349D07
Chromosome5 (Build37)
Map Location 20,514,767 - 20,515,291
singlet/doubletsinglet
Overlap genePtpn12
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
Downstream geneEG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349D07.T7 (MSMg01no349_d07.b1)MSMg01-349D07.TJ (MSMg01no349_d07.g1)
ACCAG461118AG461119
length742768
length of high quality
(start - end)		529 (42 - 570)477 (78 - 554)
definitionCHROMAT_FILE: MSMg01no349_d07.b1 PHD_FILE: MSMg01no349_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005CHROMAT_FILE: MSMg01no349_d07.g1 PHD_FILE: MSMg01no349_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTAAACTCTCATGTTTAGTATGTGTCAGGTAAGGCTTTGTCTGTCCC
CTCTCTTTCCTTCCCTTCTTTCTGCTAAGGGACAACATTATCGGGAGGTA
GCCCTGAGCGGCTAAAGCTCACATCAGCCTCCTTGGTTTGGGGTTATAAG
CGTGTCCCTACACCCAGCACTTCTCTGCAGACCACGGGATCTCAGATCAG
TAAGGCCTTTATATCTATATACAGTTTTTAAAGTCTGAGACTTCATCACT
CATGAAAATTTGCCTGACACTGATCATATGAGGAAATACGATGTTTTACA
GCAACATTTAGACAGTCTATTAACCAGATTAGATTATATCAATTCACAGG
GTCTTATTCTCAAACACACCATAACAGGGCTAGGAAAAGCTCAAGATATA
GTAAAACATCATATTAATGTAGAAATAAAACCTTATCTCACAAAACATAA
ACACTGTACTTCTCTACATTTAGAAAATTATTTTGTACCTGCAATGAATA
CAAATAGGCACATCTTCATGTTCTTGGTATTTCCTCATTAAGCTTATCAT
GTCCAGAATAGAATCAAATGACGAAGGAACATCATGGTCTGGCCAGTTCA
CGTAATGAAACTGATAGAGCTGACGGGATTCCTACATGAAAGCAGAAATT
CCCGGGCTGGAGAGAAGACTCACCACCTAAGAACACCGACGG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTTTAATAACCAGGGCTGG
GGAAATGGCTCTGTGGGTAAGTGGTTGCTGAACAAGTGTGAGGAGCAGGG
AGAGCCTCAGCACCCGAGTAAATGCCGGGTGGGTGTGGCAGCCCACTTGG
CATCTCACTGTGGGAGACACGCAGGATCTCTGGAGCAGTTTGCTACAGAA
TAGCTGAGATGACTAGTCCTCTGAGTTCAGTGTAAGACTTTGCCTTGTAT
AAAGTTGTAGAGAGATAGAGATACCTGATTTTGGCCTCCAGCCTGTACAC
AAACACACATCTATACACATACCCACTATATGCATACACACACACACACA
CACACATATACACCTGTATGCATGAGAGCGTGTACAAACACACACACACA
CACATATATACAGATACATGCACATGCATACCACACACATACAAACACAC
ATTTTAAAATAATTTTAATACCCTCACCTTCAAGCCACAGACACTAAAAC
AAGTTCATAGTCAGTCTTGGCCATTTTTTGACCCTCAGCTTCCATAAGTC
CCAGTTTGCTCTGTGTGGAGGGCCACAGCAAAAACTATCTTCTCTTCCTG
CCTCTCTTACACTCTCTCCAAACACCTCCCCCGTTTAAAACCCTGAAAAT
GAAGGAAAACAAAAGGTATTTTGGGTCCTCCTTTAAAAAGAGATAGGGGC
TTCTCTTTTTTACAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_d07.b1 MSMg01no349_d07.b1 CHROMAT_FILE:
MSMg01no349_d07.b1 PHD_FILE: MSMg01no349_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:45 2005
         (529 letters)



>mm_chr5_20514563_20515491
          Length = 929

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttaaactctcatgtttagtatgtgtcaggtaaggctttgtctgtcccctctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaaactctcatgtttagtatgtgtcaggtaaggctttgtctgtcccctctc 264

                                                                       
Query: 65  tttccttcccttctttctgctaagggacaacattatcgggaggtagccctgagcggctaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccttcccttctttctgctaagggacaacattatcgggaggtagccctgagcggctaa 324

                                                                       
Query: 125 agctcacatcagcctccttggtttggggttataagcgtgtccctacacccagcacttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctcacatcagcctccttggtttggggttataagcgtgtccctacacccagcacttctc 384

                                                                       
Query: 185 tgcagaccacgggatctcagatcagtaaggcctttatatctatatacagtttttaaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcagaccacgggatctcagatcagtaaggcctttatatctatatacagtttttaaagtc 444

                                                                       
Query: 245 tgagacttcatcactcatgaaaatttgcctgacactgatcatatgaggaaatacgatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 tgagacttcatcactcatgaaaatttgcctgacactgatcatatgaggaaatatgatgtt 504

                                                                       
Query: 305 ttacagcaacatttagacagtctattaaccagattagattatatcaattcacagggtctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacagcaacatttagacagtctattaaccagattagattatatcaattcacagggtctt 564

                                                                       
Query: 365 attctcaaacacaccataacagggctaggaaaagctcaagatatagtaaaacatcatatt 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 attctcaaacacaccataacagggctaggaaaagctcaagatataataaaacatcatatt 624

                                                                       
Query: 425 aatgtagaaataaaaccttatctcacaaaacataaacactgtacttctctacatttagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgtagaaataaaaccttatctcacaaaacataaacactgtacttctctacatttagaa 684

                                                        
Query: 485 aattattttgtacctgcaatgaatacaaataggcacatcttcatg 529
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aattattttgtacctgcaatgaatacaaataggcacatcttcatg 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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