XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAAA
GAGGAAATTCAAATGTCTGAGAAACACTTAAAGAAATGTTCAACACCTTT
AAACATCAAGGAAATCACCACTTTGAGATTTTAATCTTAAGCCTTTCAGA
ATGTAAGATCAATAAAAATAAGTGATAGCTCAGGTTGGTGAGGAATTGGA
GTAAAAGGAACACTTATCCATTGCTGGTATAAAAACAAACTTGTACAGCT
GCTACAGAAATCAGTACTGTGGTCTCTAAGGAAGATGGGAATCGATCTAA
CTTATGATCCAACTATATCACTCAGGCATCTATCAAAGAATGCTTTATCC
TACTACAGAGACTCTTGTCAACTATATCCATTGCTCCTTTATTCATAATA
CCCAGAAATGAGAAACAACTTAGATGTCCCTTAACAGATGAAAAGATAAT
GCAAATATAGTATATTTACATGATGGACTGTAACTCATCTGTTTAGTACA
ACACAATTCACAGGTAAATGGATAGAACTGGGAAAAAGAATCATCCTGAG
AGGTAATCATGGACACAAGAAGAGAAATGTGGTAGGTATTCACATATATG
TGGATATTAGCTCCTAAGGCAAAGATAACCAATCTACAACCCACAGAACC
ACAGTGGTTGTCTGTGCATGCTCTCTCAGTCCCAATGCACACATATTTAC
ATCAATCCAGTTGATTCACAGGACCTTGGTTTTTGATGTGTTCCATGCCC
TGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACAGTGTGAGTTAAGCAGAAGAGGCCCC
ACCAATGAAGAAATGGGATTGGATACACATTATTACCCAGAACCACATGC
ATGGGCTAAGTAAAAATAGAATTTGTTAAATGTGAGAATCTTTAGTTCTT
TTTATCTGTGTCCCCCTTGTTTATAGTTTTTATACCATCATATCATTGTT
CCATTATTTTTATTTATGTGGTGTGTGAGTTACATGTGGTCAGTTGCAAT
CATGTAGAGACCAGAGGAGTATATTGCTGTGTTCTTCTATCACACTTTTT
TTTTTTTGAGGACAGAGTATCTTACTAAATTTGAAGTTTGCTATTTTAGT
CCTAAGCTGACCAGCAAATCCGCAAAAGCCACCTATCTCTGTGCCCCCAA
CACTGGGGTTAGAAATATAAATGGCCATAGCAAGCCTTTTACATGGGCAA
TGGTGGATTTGGTTTTCTTGCTTTCCTAGCGAACACTCTTGCTCACTGAG
TCATCTCCCTAACCCTCATAAACTGATTATTAAAACTCTTTAATTACTGC
CAGAGCAGCTTGATAGCAAGAAGAAATGACAGTGGGCATCTTTTCTCCCC
CAGGGTTTCTTCTGATTTTTTGGTACTTTCACTTACCCCACCCCCTTGAG
GAATAAAACATGATGCTTAACAAAATAAACTGGGCAATTTAAACAAAAAA
CACCCTTTGGCCCGGGTCTTGTTTTA

Query= MSMg01no349_d16.g1 MSMg01no349_d16.g1 CHROMAT_FILE:
MSMg01no349_d16.g1 PHD_FILE: MSMg01no349_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:47 2005
         (511 letters)



>mm_chr5_50264795_50265706
          Length = 912

 Score =  890 bits (460), Expect = 0.0
 Identities = 499/512 (97%), Gaps = 1/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtgtgagttaagcagaagaggccccaccaatgaagaaatgggattggatacacatt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 712 cacagtgtgagttaagcagaagaggtcccaccaatgaagaaatgggattggatacacatt 653

                                                                       
Query: 61  attacccagaaccacatgcatgggctaagtaaaaatagaatttgttaaatgtgagaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 attacccagaaccacatgcatgggctaagtaaaaatagaatttgttaaatgtgagaatct 593

                                                                       
Query: 121 ttagttctttttatctgtgtcccccttgtttatagtttttataccatcatatcattgttc 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 592 ttagttctttttatctgtgtcccacttgtttatagtttttataccatcatgtctttgttc 533

                                                                       
Query: 181 cattatttttatttatgtggtgtgtgagttacatgtggtcagttgcaatcatgtagagac 240
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 532 cattatttttatttatgtggtgtgtgagttatatgtggtcaattgcaatcatgtagagac 473

                                                                       
Query: 241 cagaggagtatattgctgtgttcttctatcacactttttttttt-ttgaggacagagtat 299
           ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |
Sbjct: 472 cagaggagtatattgctgtgttcttctatcacacttttttttttcctgaggacagagtgt 413

                                                                       
Query: 300 cttactaaatttgaagtttgctattttagtcctaagctgaccagcaaatccgcaaaagcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cttactaaatttgaagtttgctattttagtcctaagctgaccagcaaatccgcaaaagcc 353

                                                                       
Query: 360 acctatctctgtgcccccaacactggggttagaaatataaatggccatagcaagcctttt 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 352 acctatctctgtgcccccaacactggagttagaaatataaatggccatagcaagcctttt 293

                                                                       
Query: 420 acatgggcaatggtggatttggttttcttgctttcctagcgaacactcttgctcactgag 479
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 292 acatgggcaatggtggatttggttttcttgctttcccagcaaacactcttgctcactgag 233

                                           
Query: 480 tcatctccctaaccctcataaactgattatta 511
           ||||||||||||||||| ||||||||||||||
Sbjct: 232 tcatctccctaaccctcgtaaactgattatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space:   451902
Effective search space used:   451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)