Query= MSMg01no349_e01.b1 MSMg01no349_e01.b1 CHROMAT_FILE:
MSMg01no349_e01.b1 PHD_FILE: MSMg01no349_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
(512 letters)
>mm_chr5_12039250_12040161
Length = 912
Score = 804 bits (416), Expect = 0.0
Identities = 467/512 (91%), Gaps = 43/512 (8%)
Strand = Plus / Plus
Query: 1 tgttaattgatattatttgattaatataaaagtactagatgtgatatataaattctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgttaattgatattatttgattaatataaaagtactagatgtgatatataaattctcctt 303
Query: 61 ttctttttctttttctttttctttttcttttttcttttttgtttttttttgagacaagtt 120
|| |||||||||||||||
Sbjct: 304 tt-------------------------------------------tttttgagacaagtt 320
Query: 121 ctgactatattgctacagcagccttgtacttgtgattctcccgcttctgctgtctctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgactatattgctacagcagccttgtacttgtgattctcccgcttctgctgtctctgag 380
Query: 181 taattagagtataagcagttctctccatgtccagctcttgcacttaaacttgccacctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattagagtataagcagttctctccatgtccagctcttgcacttaaacttgccacctaa 440
Query: 241 aatttgcagaaataaacaaacaagcaaaacctattgtgaaaattacaagacaagattcag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttgcagaaacaaacaaacaagcaaaacctattgtgaaaattacaagacaagattcag 500
Query: 301 aggaagaaaatttaaggaaatctctctagttcaggaaagttcctaccccaagaacagatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aggaagaaaatttaaggaaatctctctagttcaggaaagttcctaccccaagaaccgatt 560
Query: 361 tactgcatcggaagtctgaaggaagatgggcaagctactgaagggagcattcaatttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgcatcggaagtctgaaggaagatgggcaagctactgaagggagcattcaatttctg 620
Query: 421 ctcttggaatgctgggcaattgtaagaaagggtaagaagctggcaagacatatgagccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttggaatgctgggcaattgtaagaaagggtaagaagctggcaagacatatgagccag 680
Query: 481 aagtatcatctctggtattgatacacacacac 512
||||||||||||||||||||||||||||||||
Sbjct: 681 aagtatcatctctggtattgatacacacacac 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_e01.g1 MSMg01no349_e01.g1 CHROMAT_FILE:
MSMg01no349_e01.g1 PHD_FILE: MSMg01no349_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
(632 letters)
>mm_chr5_12203734_12204765
Length = 1032
Score = 1191 bits (616), Expect = 0.0
Identities = 628/632 (99%)
Strand = Plus / Minus
Query: 1 attcactcattgaagacaacagaagggatgcaacttcctattgctgagcccaaatataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 attcactcattgaagacaacagaagggatgcaacttcctattgctgagcccaaatataga 773
Query: 61 aacactaaattgtacaattgtaaaagggctttgtggtttaccggaagagattccatacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 772 aacactaaattgtacaattgtaaaagggctttgtggtttaccggaagagattccaaacca 713
Query: 121 agagtgaagctcattgcagagatgaaatggataccagatttaggtgatgtcaacttgatg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 712 agagtgaagctcattgcagagatgaaatggataccagatttaggtgatatcaacttgatg 653
Query: 181 tctcaggatttagtagctaatatttttctcctcaaaataattattttttctcctctgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tctcaggatttagtagctaatatttttctcctcaaaataattattttttctcctctgatc 593
Query: 241 cttatgaatatgacaacatttcttagaccagtcaaatgtgttgaaataagcttctactac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttatgaatatgacaacatttcttagaccagtcaaatgtgttgaaataagcttctactac 533
Query: 301 tgaacataatgtaatttctaggcattttgtttagctaatgtttgggtatctattttacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgaacataatgtaatttctaggcattttgtttagctaatgtttgggtatctattttacaa 473
Query: 361 gtaaaatatttcctgttttatgtacatacaattcagagagcaaataaacaggccagctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtaaaatatttcctgttttatgtacatacaattcagagagcaaataaacaggccagctgt 413
Query: 421 ttatatagtatcatactctccagtagtacaaagcaatgcagacttgctagaggtgatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttatatagtatcatactctccagtagtacaaagcaatgcagacttgctagaggtgatact 353
Query: 481 ccaaggagtggtcttggcaattattcattgcttcactggtgagaactgagaccaagatag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccaaggagtggtcttggcaattattcattgcttcactggtgagaactgagaccaagatag 293
Query: 541 aagaccagttggtcatgccttggcatcttaaagttcagggaaagcaaaggggcaacattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 292 aagaccagttggtcatgccttggcatcttaaagttcagggaaagcaaagggacaacattt 233
Query: 601 actacattttctacaattcttgcatttatgat 632
|||||||||||||||||||||| |||||||||
Sbjct: 232 actacattttctacaattcttgtatttatgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
