Query= MSMg01no349_e04.b1 MSMg01no349_e04.b1 CHROMAT_FILE:
MSMg01no349_e04.b1 PHD_FILE: MSMg01no349_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
(593 letters)
>mm_chr5_117893866_117894862
Length = 997
Score = 1096 bits (567), Expect = 0.0
Identities = 588/597 (98%), Gaps = 4/597 (0%)
Strand = Plus / Plus
Query: 1 gagcagtctgatgtgggtgctgggagcccagcttgatcctcttgcaagaacagccaacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagtctgatgtgggtgctgggagcccagcttgatcctcttgcaagaacagccaacgc 260
Query: 61 tcttagtagctgagctatctctcagcccccataagttacattttgaaacaccatttaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttagtagctgagctatctctcagcccccataagttacattttgaaacaccatttaaag 320
Query: 121 agccgtgggtttggatcacagtgttgcttcttctagatgtgagctgtaatctcggtgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccgtgggtttggatcacagtgttgcttcttctagatgtgagctgtaatctcggtgcaa 380
Query: 181 ctgggcaaaggatacattacgataccttacttgtgtgtcgcccagccatcaggtctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggcaaaggatacattacgataccttacttgtgtgtcgcccagccatcaggtctcaag 440
Query: 241 tcactgtaacaatgcctgtggacttatgttaaaaccttccctctgccgggccacttcagc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactgtaacaatgcctgtgggcttatgttaaaaccttccctctgccgggccacttcagc 500
Query: 301 ccagtgtggccagacatcatctggccttctcctctatggtggaggtaataagtgtgcaga 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ccagtgtggccagacatcatctggccttctcctctatggtggaggtagtaagtgtgcaga 560
Query: 361 aagccagagcatagttcccgagtctttattctgcccctcacatagccactttgtgatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccagagcatagttcccgagtctttattctgcccctcacatagccactttgtgatttg 620
Query: 421 ggcaatccatgtaatcttaatagaaacctggaggatcctgggaaagttaaaggttcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcaatccatgtaatcttaatagaaacctggaggatcctgggaaagttaaaggttcaggt 680
Query: 481 ttacttaaccaggactc----cacgatgcagctgatcaaggggtggtcagtataatgctg 536
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ttacttaaccaggactcactccacgatgcagctgatcaaggggtggccagtataatgctg 740
Query: 537 ctgaactggactttcaggtacaggaccaatagtcttaagtaggtatataaagggata 593
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ccgaactggactttcaggtacaggacaaatagtcttaagtaggtatataaagggata 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 997
Length adjustment: 10
Effective length of query: 583
Effective length of database: 987
Effective search space: 575421
Effective search space used: 575421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_e04.g1 MSMg01no349_e04.g1 CHROMAT_FILE:
MSMg01no349_e04.g1 PHD_FILE: MSMg01no349_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
(533 letters)
>mm_chr5_118072047_118072980
Length = 934
Score = 909 bits (470), Expect = 0.0
Identities = 518/534 (97%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 1 acacaatggacgcctcagagcctggaattctgaactagatgccaagcaactcctgggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 734 acacaatggacgcctcagagcctggaattctgaactagatgccaagcaagtcctgggtct 675
Query: 61 gacgggccagcacaaggacgggacccaggcatcaacgtcagcaccaccatttaatccttc 120
||||||||||||||||| | |||||||| || |||| |||||||||||||||||||||||
Sbjct: 674 gacgggccagcacaagggcaggacccagacaccaacatcagcaccaccatttaatccttc 615
Query: 121 ccagtaagcagcacccttcgggtcagccctat-gggtatatattccctattgcagttgcc 179
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 614 ccagtaagcagcacccttcgggtcagccccatggggtatatgttccctattgcagttgcc 555
Query: 180 tcccctgagccaggatctccccacagtaggatgatcggtcccggttgtaagatgcgcctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tcccctgagccaggatctccccacagtaggatgatcggtcccggttgtaagatgcgcctc 495
Query: 240 cggttcaggctgccagcttctacaaagatgcgcacgtctcctccccctcttccaggggta 299
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 494 cggttcaggctgccagcttctacagagatgcgcacgtctcctccccctcctctaggggta 435
Query: 300 atgagccttggcttcaagcctcattaaaccccattatataatcagccccatcccgggtat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgagccttggcttcaagcctcattaaaccccattatataatcagccccatcccgggtat 375
Query: 360 ctttataaccccagcagttgccttggtgggaacatggacggcggttcagcttcgtcacct 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 374 ctttataaccccagcagttgccttggtgggaacatggccggcggttcagcttcgtcacct 315
Query: 420 tcactgccacctgctatagccaccccctgtcacacccggatctgactcagtctccaggta 479
||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct: 314 tcactgccacctgctatagccgccccctgtcacacccagatctgactcagcctccaggta 255
Query: 480 cacacaaggtcgagttcttggctggtggtcaactcctctccttgtttccaggac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cacacaaggtcgagttcttggctggtggtcaactcctctccttgtttccaggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space: 483252
Effective search space used: 483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
