BAC Information

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BAC

Clone NameMSMg01-349E05
Chromosome5 (Build37)
Map Location 34,168,588 - 34,354,835
singlet/doubletdoublet
Overlap geneWhsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln
Upstream geneC330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332
Downstream geneBC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349E05.T7 (MSMg01no349_e05.b1)MSMg01-349E05.TJ (MSMg01no349_e05.g1)
ACCAG461161AG461162
length725763
length of high quality
(start - end)		476 (68 - 543)472 (72 - 543)
definitionCHROMAT_FILE: MSMg01no349_e05.b1 PHD_FILE: MSMg01no349_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:49 2005CHROMAT_FILE: MSMg01no349_e05.g1 PHD_FILE: MSMg01no349_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,354,360 - 34,354,835)(34,168,588 - 34,169,059)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATGGTTCACTGTGCTGTAGGAGGGAGCATCCTGGCAGGCTTTT
GGCAAAGGGATGAGATTAGGCCCTTCTGGAAAGTTTTCTCAAAGGAACCA
GGATCTGTCTGCCTGTGTTAGGTCAACCAGATGCAAATACCGTAGCTCTG
TGTCCTCTGTAGGGCAGATGTAAGCTATGGAGGCATGCCCTCCTTCTGGG
AGCCTGGGTGGTCTAAGCCTGCATTCTTATGCTTCTCCTGCTTGTCCCTG
TGCCCCAGCTTCCTGTGAGAAGTGCGATGTCTCTGTGTCTGTGATGGTGA
TGTGTGAGTGACTAACAGTCACACTTATTAGGTCCTGCCACACTGGCAGC
TCAGACTGCATGGTGTGATTTCAAGAAGTGTGAAGGCACTTCTGCTAAAT
CTGGAAAGAGTTGCAAGTGCCTCTTCTGAAGTTTCTGCCCATGAAAAGTA
AGCCCCTTGGGAGCCAAGGCCTACCATACACCTTGATGTGAGTTTAAGGA
AACACATCAGTGCTACAGCTTAGTCCCTGTCGTGTCCTGCCACTGTCTAA
CTTCTGGAAAGGTACTGTTGGTGCCCTAACCATAGGAAGCACATGTTACT
CTTAGACGCCTTTTTGTGAATATCCCTGATGAATATTGTGTGAATACTTT
ATTATTACTTATTCTGGTACCTATT

TTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGGAGTTCTCTTTGTCCGCTGTGTGGG
CTGTTGGAATCAGACTCAGGTTGTCAGGTGGCAAGCATCATTACCTGCTG
AGCTGTCATTTGGACCCCTGATGTGGTTTTTACAGGCTGGAAAGATAAAG
AGGAGAGGGGCACAGATATGGTAATTACAGTATGAAAATTGGTTAATACT
GGCCCCATTTTTACCTTGTAAACCAGAGGGAAGAAGGGCCTATTTTGTGA
CCTACCTTTGTTCTCTCTGAAAGGAGGCTTTGATGTCTTTGTTTTGCAAA
GTACCCTCTATCTATCCTGGTGTTCCTTGCTACTCAGTAGAATCTCTAGG
TCTAGAGGATTCCCTGTCTTCCTGTTCTGTCCTCTAGTCAATCTTTTGTT
GTCCCAAGATTATATTATTATGCTGCCCACCTCATTTAAGATAATCCTGG
TTTATTTCTGGAGTTTCAGTGCGGTTTAAAATTTTTTTTATTGCCGTTTA
TCTGTTTTGCTAGAATTTATTTTATGCGCATGGGCGTTTCGTGCGCTTGC
CTGTGAGCGTATTATGCGTGTTCCTTGATCGCTTTTTTGACATCTCTGGT
ACTGTATTTTCACCTGTGATTCCCCCTTTCGCTGTTTGATCCTGCCCTTA
TTCCTCCTTATTTCCCCCTTTTTTCCCCCCCTTCCTTAGCCCTTTCCTTC
CTCCTTTCCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_e05.b1 MSMg01no349_e05.b1 CHROMAT_FILE:
MSMg01no349_e05.b1 PHD_FILE: MSMg01no349_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
         (476 letters)



>mm_chr5_34354160_34355035
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctgtaggagggagcatcctggcaggcttttggcaaagggatgagattaggcccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtgctgtaggagggagcatcctggcaggcttttggcaaagggatgagattaggcccttct 617

                                                                       
Query: 61  ggaaagttttctcaaaggaaccaggatctgtctgcctgtgttaggtcaaccagatgcaaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggaaagttctctcaaaggaaccaggatctgtctgcctgtgttaggtcaaccagatgcaaa 557

                                                                       
Query: 121 taccgtagctctgtgtcctctgtagggcagatgtaagctatggaggcatgccctccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taccgtagctctgtgtcctctgtagggcagatgtaagctatggaggcatgccctccttct 497

                                                                       
Query: 181 gggagcctgggtggtctaagcctgcattcttatgcttctcctgcttgtccctgtgcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggagcctgggtggtctaagcctgcattcttatgcttctcctgcttgtccctgtgcccca 437

                                                                       
Query: 241 gcttcctgtgagaagtgcgatgtctctgtgtctgtgatggtgatgtgtgagtgactaaca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcttcccgtgagaagtgcgatgtctctgtgtctgtgatggtgatgtgtgagtgactaaca 377

                                                                       
Query: 301 gtcacacttattaggtcctgccacactggcagctcagactgcatggtgtgatttcaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcacacttattaggtcctgccacactggcagctcagactgcatggtgtgatttcaagaa 317

                                                                       
Query: 361 gtgtgaaggcacttctgctaaatctggaaagagttgcaagtgcctcttctgaagtttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtgtgaaggcacttctgctaaatctggaaagagttgcaagtgcctcttctgaagtttctg 257

                                                                   
Query: 421 cccatgaaaagtaagccccttgggagccaaggcctaccatacaccttgatgtgagt 476
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 256 cccatgaaaagtaagccccttgggagccaaggcctaccagacaccttgatgtgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_e05.g1 MSMg01no349_e05.g1 CHROMAT_FILE:
MSMg01no349_e05.g1 PHD_FILE: MSMg01no349_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:49 2005
         (472 letters)



>mm_chr5_34168388_34169259
          Length = 872

 Score =  890 bits (460), Expect = 0.0
 Identities = 469/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggagttctctttgtccgctgtgtgggctgttggaatcagactcaggttgtcaggtgg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tcaggagttctctttgtccgctgtgtgggctgtttgaatcagactcaggttgtcaggtgg 260

                                                                       
Query: 61  caagcatcattacctgctgagctgtcatttggacccctgatgtggtttttacaggctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcatcattacctgctgagctgtcatttggacccctgatgtggtttttacaggctgga 320

                                                                       
Query: 121 aagataaagaggagaggggcacagatatggtaattacagtatgaaaattggttaatactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagataaagaggagaggggcacagatatggtaattacagtatgaaaattggttaatactg 380

                                                                       
Query: 181 gccccatttttaccttgtaaaccagagggaagaagggcctattttgtgacctacctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccccatttttaccttgtaaaccagagggaagaagggcctattttgtgacctacctttgt 440

                                                                       
Query: 241 tctctctgaaaggaggctttgatgtctttgttttgcaaagtaccctctatctatcctggt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctctgaaaggaagctttgatgtctttgttttgcaaagtaccctctatctatcctggt 500

                                                                       
Query: 301 gttccttgctactcagtagaatctctaggtctagaggattccctgtcttcctgttctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttccttgctactcagtagaatctctaggtctagaggattccctgtcttcctgttctgtc 560

                                                                       
Query: 361 ctctagtcaatcttttgttgtcccaagattatattattatgctgcccacctcatttaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctagtcaatcttttgttgtcccaagattatattattatgctgcccacctcatttaaga 620

                                                               
Query: 421 taatcctggtttatttctggagtttcagtgcggtttaaaattttttttattg 472
           |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 taatcctggtttatttctggagtttcagtgtggtttaaaattttttttattg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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