BAC Information

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BAC

Clone NameMSMg01-349E24
Chromosome5 (Build37)
Map Location 126,483,943 - 126,484,447
singlet/doubletsinglet
Overlap genenone
Upstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178
Downstream geneLOC665760, LOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349E24.T7 (MSMg01no349_e24.b1)MSMg01-349E24.TJ (MSMg01no349_e24.g1)
ACCAG461199AG461200
length751770
length of high quality
(start - end)		587 (27 - 613)556 (72 - 627)
definitionCHROMAT_FILE: MSMg01no349_e24.b1 PHD_FILE: MSMg01no349_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:53 2005CHROMAT_FILE: MSMg01no349_e24.g1 PHD_FILE: MSMg01no349_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCCTATATGCAGAGGATCCGCGGAATTCTGAAGTAG
CTCGAGTCGCTAGTAGCTGGCCTGCTGATGAATCAGCAGTCTCAATGGCT
TCTTTTACGTGCTTCTGTATAGAGGCCCTGGTGGTATGAGCGCTCACTGG
CCAATCCAATGTAATGTGCTAACCAAGCACAGTCTATAGGCTTCCACTAT
GTAAGTAGTTGTTCACGTATAATAAAGCAGACACTGTTCCCTGAAACTGT
CTCAAGTGGTTCATTTCCACACCCCTTGCTGTCCCACGGGAACGGCAGTC
TTGTCAGGGGACACCCTGGTAACGGTGGTGGCAGAGGACCCAGGTTCACT
TCCCAGCACCACATGGGAAGTAACTATCTGTAGCCCCAGTTCCAGGGGAT
CCAGTGCCCCCCAGGCTCTAGGCATACGCTGAACAGACATTCATGGAGAA
AAATAAAACACATACAACACAATAAAAAATGATTGATCACTTCAAAGATG
CATGGCAACAGAAGGAGTTGTTCAGAGGTAGAATATCAAGGTTTCAGATC
CTAGAATGTTAGAGAAGCAGACTTAGAACTGGTGTACTCTAGAAACAAGG
TGGACAGGGATCGGGAAGGAGCCTATTGCTCTGCTGCTGTGGAAAGAACT
GTCCCGCTGATCCTTCTCCTTCANGATGGACTGTGACTCCCAGAAGCAGG
GAGACCAAAGAAACCTTCCTGCTATGCCAGATGTTTTATTATAGCAACAA
N

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTCTGTCTTTCTTCATCTCAGTCTGTG
ATGGTTTAAATATGCTTGGCCCAGGGAATGGCACTATTAGGAGGTATGGC
CTTGTTGGAGTAGGTGTGTCACTGTGGGCCTGGACTTTAATGCCTGGGAA
GTTAGTCTTCTTCAAGCTGCCTTTAGAACAAGAGATTGAACTCTCAGCTC
CTCCAGCACCATGCCTGCCTGGACACTGTCATGTTTCTAACTTGATGATA
ACAGACTGAACCTCTGAACCTGTAAGCCAGCCCAAATTAAATGCTGTCCT
TTATGAGAGTTGCCTTAGGAATGGTGTCTGTTCACAGCAGTAAAACCCTA
ACTATGACACAATCATAGCCTGGGTTCAGTATGAGCACCCTGTATATATT
ACCCTCCCATTATCAGCTAGCAGCCTTCTTAGGGATTGGATTAATGTGGC
TTTTATCATATTGCTGGGCTAAAGTATCTCATTTTACTTAATAGGAATCC
CAAAAGTCCAAAAGTGACTCCTAATACCATCTGTATGGTGCTTCCTTTAA
GTGAATATATAAAAGTAAAATATGTACCAACTCAGTAAAGAGACAAATGA
GTTTAGTATTTGCAGCTCTGCTTACTATTTTTAATGATATGATGTGAGGA
TTTATGAGATAAACTAGATTCGAGGTGCATGTTCCCAGGAAAGAAACCGG
GTATGTGTGCCCCACACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_e24.b1 MSMg01no349_e24.b1 CHROMAT_FILE:
MSMg01no349_e24.b1 PHD_FILE: MSMg01no349_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:53 2005
         (587 letters)



>mm_chr5_126483943_126484929
          Length = 987

 Score =  922 bits (477), Expect = 0.0
 Identities = 498/505 (98%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattctgaagtagctcgagtcgctagtagctggcctgctgatgaatcagcagtctcaat 70
           ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 505 gaattctgaagtagcacgagtcgctagtcgctggcctgctgatgaatcagcattctcaat 446

                                                                       
Query: 71  ggcttcttttacgtgcttctgtatagaggccctggtggtatgagcgctcactggccaatc 130
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcttcttttatgtgcttctgtacagaggccctggtggtatgagcgctcactggccaatc 386

                                                                       
Query: 131 caatgtaatgtgctaaccaagcacagtctataggcttccactatgtaagtagttgttcac 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgtaatgtgctaaccaagcacagtctataggcttccactatgtaagtagttgttcac 326

                                                                       
Query: 191 gtataataaagcagacactgttccctgaaactgtctcaagtggttcatttccacacccct 250
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atataataaagcagacactgttccctgaaactgtctcaagtggttcatttccacacccct 266

                                                                       
Query: 251 tgctgtcccacgggaacggcagtcttgtcaggggacaccctggtaacggtggtggcagag 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgtcccacgggaacggcagtcttgtcaggggacaccctggtaacggtggtggcagag 206

                                                                       
Query: 311 gacccaggttcacttcccagcaccacatgggaagtaactatctgtagccccagttccagg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gacccaggttcacttcccagcaccacatgggaagtaactatctgtagccccagttccagg 146

                                                                       
Query: 371 ggatccagtgccccccaggctctaggcatacgctgaacagacattcatggagaaaaa-ta 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 145 ggatccagtgccccccaggctctaggcatacgctgaacagacattcatggagaaaaaata 86

                                                                       
Query: 430 aaacacatacaacacaataaaaaatgattgatcacttcaaagatgcatggcaacagaagg 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  aaacacatacaacacaataaaaaatgattgatcacttcaaagatgcatggcaacagaagg 26

                                    
Query: 490 agttgttcagaggtagaatatcaag 514
           |||||||||||||||||||||||||
Sbjct: 25  agttgttcagaggtagaatatcaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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