Query= MSMg01no349_g01.b1 MSMg01no349_g01.b1 CHROMAT_FILE:
MSMg01no349_g01.b1 PHD_FILE: MSMg01no349_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(236 letters)
>mm_chr5_114265647_114266281
Length = 635
Score = 346 bits (179), Expect = e-100
Identities = 221/237 (93%), Gaps = 5/237 (2%)
Strand = Plus / Plus
Query: 1 tttgagaatcagttgtttagcaaatacattgccagaaaagccaaaagcatccacactcaa 60
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttgagaatcagttgtttagcgaatacattgccagaaaagccaaaagcttccacactcaa 260
Query: 61 aaccccaagct--gccacctcccgacaccttctcccagaagcaggtggctggcgccccct 118
|||||| |||| | ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aaccccgagctggg---cctccggacacctcctcccagaagcaggtggctggcgccccct 317
Query: 119 ggtggctgttcgcctcatccagcgggtgacccatccgagaaagaaaacgttcttacacag 178
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 ggtggctgttcacctcacccagcgggtgacccatccgagaaagaaaacgttcttatacag 377
Query: 179 catccccaggaagaggacgagggccctggggaattgttatggtgccctcaagtcctg 235
||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 378 catccccaggaaggggacgaggaccctggggaattgttatggtgccctcaaatcctg 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space: 142102
Effective search space used: 142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no349_g01.g1 MSMg01no349_g01.g1 CHROMAT_FILE:
MSMg01no349_g01.g1 PHD_FILE: MSMg01no349_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(405 letters)
>mm_chr5_114392846_114393649
Length = 804
Score = 760 bits (393), Expect = 0.0
Identities = 402/405 (99%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 1 gcaaagtgaagcctccctacacatcctgtgccgactgcatgtaccccacagctggtggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gcaaagtgaagcctccctacacatcctgtgccgactgcatgtaccccacagctggtggga 545
Query: 61 ctcccgaggcctacatggagcgacacgaagaccccagctcctctgctatctgcacccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctcccgaggcctacatggagcgacacgaagaccccagctcctctgctatctgcacccagc 485
Query: 121 caaccttcctcccccatgtcacgtcttccccaatggcccacgcgagcagcaggtcccgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caaccttcctcccccatgtcacgtcttccccaatggcccacgcgagcagcaggtcccgag 425
Query: 181 ctccggagaggccggcctcgggtccagccaacacctctccattcctactaccagcaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctccggagaggccggcctcgggtccagccaacacctctccattcctactaccagcaggct 365
Query: 241 ccaggtaattcagatgtcagtggctctggagccggggctgccccggaaccaccagcaagc 300
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccagg-aagccagatgtcagtggctctggagccggggctgccccggaaccaccagcaagc 306
Query: 301 cttctagagccttccagagagacctcaaaagcccttccaaaatctctccagttgaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cttctagagccttccagagagacctcaaaagcccttccaaaatctctccagttgaagaat 246
Query: 361 cctcactgtgacaagaacgctgccaatatggaggtgtcggcgaag 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctcactgtgacaagaacgctgccaatatggaggtgtcggcgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space: 314820
Effective search space used: 314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
