BAC Information

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BAC

Clone NameMSMg01-349G23
Chromosome5 (Build37)
Map Location 99,236,929 - 99,413,451
singlet/doubletdoublet
Overlap geneBmp3, Prkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349G23.T7 (MSMg01no349_g23.b1)MSMg01-349G23.TJ (MSMg01no349_g23.g1)
ACCAG461291AG461292
length747774
length of high quality
(start - end)		529 (41 - 569)458 (73 - 530)
definitionCHROMAT_FILE: MSMg01no349_g23.b1 PHD_FILE: MSMg01no349_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:02 2005CHROMAT_FILE: MSMg01no349_g23.g1 PHD_FILE: MSMg01no349_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,412,927 - 99,413,451)(99,236,929 - 99,237,386)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTATTCCATTGAAAATGCCCGTGGCTTTTTGGTCGTCTAAGGGACCCTT
TGCGACGTAACCGCAGGGCTGTCACCGCACTGTTTGCTCTTCTCTTTTTG
GTTGCAGTGGCCACCCTGGCCTGACTGGCTGCATTCCCCAGTTGACAAAT
ACTGGGCAGTCCAGCATCGTGGCCAGTTCTTACCACCATATATTTTTGGT
CTGACCTGTTTCCACAGGCTTTCCTGGTCCACGAGTTGCTGTCGACACAC
TGGGAGGTACTATTTGCCTTCCTTCCTCGGTTTGAGGTGACAAAGAACCA
TCCCTGGGCTGATTCCACAGGGGAAGTTACCCTTTAAGAAATAATAAGGC
TCTTTCTCAATGTCCCTTCTCAAGCTTGTACCCTCTGAACTTGCTGGTTG
TCAGGAATTAAGACCACACCTCTGTACATGTAAGAGGATTTGTAGTAGTC
CAAGAACAGCCTGGTAGCCCATCAGAAGCTTCTCGTGTCGTTTCTATTCC
ATGTCTGGGTCGGGGACCAAGATTGGAATGGGGGTAAGGGACATCCCCAG
CCATGGTCCACCTGGCAGGACACTGCCACTTCACCGAAGTGATTGGGATT
TTAATTAAGTACAGGAGGAGGGCACCTTTGGATTGCACGGATGTGGGCAT
TCCTAAAGGGTCATAAGTACTGCCATTGGGAAATAAAGCATCTCCAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATTTCTGTAATTATGGAAACTCTGCT
AAGCTGATGGGCAGATAAGAATCTTCAGGACAGTGAGGAGATCTGGGGGC
AGGGCAAAAAGCACCTGTAGGTCAACAGAGTAGGAGGTGGTCCAGACAGC
ACTACGCTTAGGTTCTAGGGCTCCACGGCAGCAAGGCCTTTGGTAATCTG
ATGAAGCAGAAAACAGAAGGAGTGCCCTGTGAAGCGTCTTCCATTAATCA
TTCCCCAGGACAACCGATGAAGGCAAGCAAGCGTGCAGTAAAACCTTACC
CGACACACGGCTGGCCTTTCTATGTTGTCAGATCTCCGAGGATCATCGGA
TTTGAAGGAAGCAGTACATAGTAACTTCAAGGGAGCATCTACCCCTTCCC
TTGTGAAGTTTGCATGGTGGTCAGATGCACTTCTCAGACAGGAGAAGGGA
TACTGTTCCTCTCAGGAAATTTACCAGCTTGGAATAAAAATCTAAGGAAT
CTTGGTTTCTTTTATTGCTCTTGGCTCTTGCTGCTGTTATTGTGCTTGTG
NGTTATCCCTCACCTCATGTTACATTTCCCAAAAGAGTATANAAAAAGCA
GGCATGCAGTGGCAGTTGAAGTAACATTCTATCTGGGCCTCTTATGGAAA
GTTGAACTGGAGGCTTTTAGTTGGTATCCCGACTCTTGCCGGGACAAGTA
TACAAAAAGGGACATTTTAGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_g23.b1 MSMg01no349_g23.b1 CHROMAT_FILE:
MSMg01no349_g23.b1 PHD_FILE: MSMg01no349_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:02 2005
         (529 letters)



>mm_chr5_99412723_99413651
          Length = 929

 Score =  946 bits (489), Expect = 0.0
 Identities = 516/525 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttattccattgaaaatgcccgtggctttttggtcgtctaagggaccctttgcg 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattccttattccagggaaaatgcccgtggctttttggtcgtctaagggaccctttgcg 670

                                                                       
Query: 65  acgtaaccgcagggctgtcaccgcactgtttgctcttctctttttggttgcagtggccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acgtaaccgcagggctgtcaccgcactgtttgctcttctctttttggttgcagtggccac 610

                                                                       
Query: 125 cctggcctgactggctgcattccccagttgacaaatactgggcagtccagcatcgtggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctggcctgactggctgcattccccagttgacaaatactgggcagtccagcatcgtggcc 550

                                                                       
Query: 185 agttcttaccaccatatatttttggtctgacctgtttccacaggctttcctggtccacga 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 549 agttcttaccaccatatatttttggtctgacctatttccacaggctttcctggtccacga 490

                                                                       
Query: 245 gttgctgtcgacacactgggaggtactatttgccttccttcctcggtttgaggtgacaaa 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 gttgctgtcgacacactgggaggtactatttgccttccttcctcagtttgaggtgacaaa 430

                                                                       
Query: 305 gaaccatccctgggctgattccacaggggaagttaccctttaagaaataataaggctctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaccatccctgggctgattccacaggggaagttaccctttaagaaataataaggctctt 370

                                                                       
Query: 365 tctcaatgtcccttctcaagcttgtaccctctgaacttgctggttgtcaggaattaagac 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctcaatgtcccttctcaagctcgtaccctctgaacttgctggttgtcaggaattaagac 310

                                                                       
Query: 425 cacacctctgtacatgtaagaggatttgtagtagtccaagaacagcctggtagcccatca 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacacctctgtgcatgtaagaggatttgtagtagtccaagaacagcctggtagcccatca 250

                                                        
Query: 485 gaagcttctcgtgtcgtttctattccatgtctgggtcggggacca 529
           |||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 249 gaagcttctcatgtcatttctattccatgtctgggtcagggacca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_g23.g1 MSMg01no349_g23.g1 CHROMAT_FILE:
MSMg01no349_g23.g1 PHD_FILE: MSMg01no349_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:02 2005
         (458 letters)



>mm_chr5_99236729_99237586
          Length = 858

 Score =  870 bits (450), Expect = 0.0
 Identities = 456/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttctgtaattatggaaactctgctaagctgatgggcagataagaatcttcaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttctgtaattatggaaactctgctaagctgatgggcagataagaatcttcaggaca 260

                                                                       
Query: 61  gtgaggagatctgggggcagggcaaaaagcacctgtaggtcaacagagtaggaggtggtc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggagatctgggggcagggcaaaaagcacctgtaggtcaacagagtaggaggtggtc 320

                                                                       
Query: 121 cagacagcactacgcttaggttctagggctccacggcagcaaggcctttggtaatctgat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cagacagcactacgcttaggttctagggctccacggcagcaaggcctttgataatctgat 380

                                                                       
Query: 181 gaagcagaaaacagaaggagtgccctgtgaagcgtcttccattaatcattccccaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagcagaaaacagaaggagtgccctgtgaagcgtcttccattaatcattccccaggaca 440

                                                                       
Query: 241 accgatgaaggcaagcaagcgtgcagtaaaaccttacccgacacacggctggcctttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgatgaaggcaagcaagcgtgcagtaaaaccttacccgacacacggctggcctttcta 500

                                                                       
Query: 301 tgttgtcagatctccgaggatcatcggatttgaaggaagcagtacatagtaacttcaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgtcagatctccgaggatcatcggatttgaaggaagcagtacatagtaacttcaagg 560

                                                                       
Query: 361 gagcatctaccccttcccttgtgaagtttgcatggtggtcagatgcacttctcagacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcatctaccccttcccttgtgaagtttgcatggtggtcagatgcacttctcagacagg 620

                                                 
Query: 421 agaagggatactgttcctctcaggaaatttaccagctt 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagggatactgttcctctcaggaaatttaccagctt 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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