Query= MSMg01no349_j09.b1 MSMg01no349_j09.b1 CHROMAT_FILE:
MSMg01no349_j09.b1 PHD_FILE: MSMg01no349_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:14 2005
(506 letters)
>mm_chr5_106830964_106831868
Length = 905
Score = 901 bits (466), Expect = 0.0
Identities = 496/506 (98%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 1 cagaccttcatgttttggaatttgagggtgctgagacaaatctcttttggtgtttaagga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cagaccttcatgttttggaatttgagggtgctgagacaagtctcttttggtgtttaagga 260
Query: 61 aagtatattcacttcagaggaaaccaccacttcttgctagaaagacaaaacagtatattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtatattcacttcagaggaaaccaccacttcttgctagaaagacaaaacagtatattg 320
Query: 121 gcagggatggagatgcagaaacactctaattgatggctttctaaaggcagtgggaggctg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct: 321 gcagggatggagatgcagaaacactctaattgatggatttctaaaggcagtggtatgctg 380
Query: 181 agtggtactacaccccatgtcataagtgtcaaattatctgttcactacatggactcagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggtactacaccccatgtcataagtgtcaaattatctgttcactacatggactcagat 440
Query: 241 ttttgggtctctttctcatctttaaaagaagtatttgattaatcaagttaatgaggtcag 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttttgggtctcaatc-catctttaaaagaagtatttgattaatcaagttaatgaggacag 499
Query: 301 tattcaaatgatactttttttttcaagccaatacaagaaaactagaagatccagctcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattcaaatgatactttttttttcaagccaatacaagaaaactagaagatccagctcttg 559
Query: 361 tgacaagagaagacatagtatcaatttgaacgaggttaggatggaagacatagtatcagt 420
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 tgacaagagaagacttagtatcaatttgaacgaagttaggatggaagacatagtatcagt 619
Query: 421 ttcaactagattaggatgcctagtttaaatctcacactgatggagcacatgaatcagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcaactagattaggatgcctagtttaaatctcacactgatggagcacatgaatcagaag 679
Query: 481 gaagggttacttaacactaactgcct 506
||||||||||||||||||||||||||
Sbjct: 680 gaagggttacttaacactaactgcct 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_j09.g1 MSMg01no349_j09.g1 CHROMAT_FILE:
MSMg01no349_j09.g1 PHD_FILE: MSMg01no349_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:14 2005
(530 letters)
>mm_chr5_106981387_106982315
Length = 929
Score = 1000 bits (517), Expect = 0.0
Identities = 527/531 (99%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 1 tggtcatcaagctttttggcaagtgccttcccacactgagccatctcatcaaacttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tggtcatcaagctttttggcaagtgccttcccacactgagccatctcatcaaacttctgg 720
Query: 61 ttgggtcttctatactgaaataattattcctcttggcaagttgccatggatagaccagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgggtcttctatactgaaataattattcctcttggcaagttgccatggatagaccagga 660
Query: 121 atggacagattttcccaaatacataacaaaacatgtcttcatatgaggcaggcattaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atggacagattttcccaaatacataacaaaacatgtcttcatatgaggcaggcattaaat 600
Query: 181 ctgtcttttgtggtgcctcagggatgtatccaaccctctttccagtctctgtttcaactt 240
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 599 ctgtcttttgtggtgcctcagggatgtgtccaaccctctttccag--tctgtttcaactt 542
Query: 241 a-tcggacccatgcctggattgtgccaactgtcccctagctagtacccaacttaatttct 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attcggacccatgcctggattgtgccaactgtcccctagctagtacccaacttaatttct 482
Query: 300 ttccttcgtaattagatatcaccaaatcagtgttctttgtggaacactttccttattctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttccttcgtaattagatatcaccaaatcagtgttctttgtggaacactttccttattctc 422
Query: 360 ttatcaagatcataagtggattccttggtgggctaagactttatcatacaggcagtccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttatcaagatcataagtggattccttggtgggctaagactttatcatacaggcagtccaa 362
Query: 420 atagccttatctcattccagaacatttattcagctgtatgtctctcccattgacctcgtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagccttatctcattccagaacatttattcagctgtatgtctctcccattgacctcgtt 302
Query: 480 tttgtcccagaatggctagctttggtgccaacaactctcaactacacttgc 530
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgtcccagaatggctagctttggtgccaacaactctcaactacacttgc 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
