Query= MSMg01no349_k06.b1 MSMg01no349_k06.b1 CHROMAT_FILE:
MSMg01no349_k06.b1 PHD_FILE: MSMg01no349_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:19 2005
(346 letters)
>mm_chr5_114265642_114266386
Length = 745
Score = 491 bits (254), Expect = e-143
Identities = 320/344 (93%), Gaps = 5/344 (1%)
Strand = Plus / Plus
Query: 5 ttttgagaatcagttgtttagcaaatacattgccagaaaagccaaaagcatccacactca 64
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 205 ttttgagaatcagttgtttagcgaatacattgccagaaaagccaaaagcttccacactca 264
Query: 65 aaaccccaagct--gccacctcccgacaccttctcccagaagcaggtggctggcgccccc 122
||||||| |||| | ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 265 aaaccccgagctggg---cctccggacacctcctcccagaagcaggtggctggcgccccc 321
Query: 123 tggtggctgttcgcctcatccagcgggtgacccatccgagaaagaaaacgttcttacaca 182
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 tggtggctgttcacctcacccagcgggtgacccatccgagaaagaaaacgttcttataca 381
Query: 183 gcatccccaggaagaggacgagggccctggggaattgttatggtgccctcaagtcctgta 242
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 382 gcatccccaggaaggggacgaggaccctggggaattgttatggtgccctcaaatcctgta 441
Query: 243 gcttccaggtttgtttttcctacccgctactgtttctgatccaaagggaggataaaccca 302
|||||||||| ||| |||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct: 442 gcttccaggtctgtgaatcctccccgctactttttttgatccaaagggaggataaaccca 501
Query: 303 tgatctgctcagtccgccagctggcggcctctgcaggtccagag 346
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggatctgctcagtccgccagctggcggcctctgcaggtccagag 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space: 248032
Effective search space used: 248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_k06.g1 MSMg01no349_k06.g1 CHROMAT_FILE:
MSMg01no349_k06.g1 PHD_FILE: MSMg01no349_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:19 2005
(281 letters)
>mm_chr5_114436214_114436894
Length = 681
Score = 505 bits (261), Expect = e-147
Identities = 276/285 (96%), Gaps = 8/285 (2%)
Strand = Plus / Minus
Query: 1 cttctaccctccacccgtccatcccttcctctctgggcactgggccagggagagcattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttctaccctccacccgtccatcccttcctctctgggcactgggccagggagagcattga 422
Query: 61 gctagctttgtctttaattgcccttaattagcaggatgcttgaagatgttttatagccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctagctttgtctttaattgcccttaattagcaggatgcttgaagatgttttatagccga 362
Query: 121 gaacttagaactgtgataagaaactgtgtctgtctgtggtcccttctcactaataaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaacttagaactgtgataagaaactgtgtctgtctgtggtcccttctcactaataaaaga 302
Query: 181 gaaagtttcctggtttggcactttggggaggcctgacataggatgggggttggtgtctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaagtttcctggtttggcactttggggaggcctgacataggatgggggttggtgtctct 242
Query: 241 gtactttga----tttttttgtgttccagtgaagtatttgtgtgt 281
||||||||| | ||||||||||||||||||||||||||
Sbjct: 241 gtactttgacacc----tctgtgttccagtgaagtatttgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
