Query= MSMg01no349_n20.b1 MSMg01no349_n20.b1 CHROMAT_FILE:
MSMg01no349_n20.b1 PHD_FILE: MSMg01no349_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:36 2005
(602 letters)
>mm_chr5_97719186_97720186
Length = 1001
Score = 1087 bits (562), Expect = 0.0
Identities = 589/598 (98%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 5 gaattcattataatattacttttaatgagggtgtctatggggctttgttcctggtgtttc 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattataatagaatttttaatgagggtgtctatggggctttgttcctggtgtttc 264
Query: 65 catagtaaggctagggtcttctgcctcttttatggtcaggtgaccatgaaatgtgagcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catagtaaggctagggtcttctgcctcttttatggtcaggtgaccatgaaatgtgagcta 324
Query: 125 cagctgctacagggcatgtccctgctggtgcttaatttatagcaagtacacattttactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctgctacagggcatgtccctgctggtgcttaatttatagcaagtacacattttactg 384
Query: 185 ctaatgtgtttctcatccatccttctaatatttatggggaaaaccacactagggaggcat 244
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ctaatgtgtttctcatccatccttctaatatttatggggggaaccacactagggaggcat 444
Query: 245 agattcagttaaggatgctggattaggtgagtttgaatctcttactgggtatgtaacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agattcagttaaggatgctggattaggtgagtttgaatctcttactgggtatgtaacttt 504
Query: 305 gagtctcagtgcctcaatttccccctttttaaagtaaggaaagtttgcctgagtgtgtgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagtctcagtgcctcaatttccccctttttaaagtaaggaaagtttgcctgagtgtgtgg 564
Query: 365 ctcacgcctgtaacaccatcacttgggtggtcattgcagcaggattaccagtagttagag 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcacgcctgtaacatcatcacttgggtggtcattgcagcaggattaccagtagttagag 624
Query: 425 gacaggcttagattatgtcatgagctctaggctagagtgagactcaggtgccatttaccc 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 gacaggcttagattatgtcatgagttctaggctagagtgagactcaggtgccatttaccc 684
Query: 485 cacaaaaggataattttgttaataataggacatagatgttgtgaaatttaaataagtcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacaaaaggataattttgttaataataggacatagatgttgtgaaatttaaataagtcag 744
Query: 545 acatttcaagagtgcaggattgtcccaatcacatgttttctgtactgtctgctgttgt 602
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 745 acatttcaagagtgcaggattgtcccaatcacatgttt-ctgtgctgtctgctgttgt 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space: 586672
Effective search space used: 586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_n20.g1 MSMg01no349_n20.g1 CHROMAT_FILE:
MSMg01no349_n20.g1 PHD_FILE: MSMg01no349_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:36 2005
(574 letters)
>mm_chr5_97927979_97928951
Length = 973
Score = 1048 bits (542), Expect = 0.0
Identities = 566/574 (98%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 1 cacagaaataggtaagactttcaacatctttagacatagtgaaagtgtccaggaactccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cacagaaataggtaagactttcaacatctttagacatagtgaaagtgtccaggaactccc 714
Query: 61 tgaggtggttctgctcttatttcatgtagaataagatgaaaacaaactacttggtacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgaggtggttctgctcttatttcatgtagaataagatgaaaacaaactacttggtacata 654
Query: 121 acaaagattggtcagcagcacattagagtatgtctactcttgtaaactgtgttgacagag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acaaagactggtcagcagcacattagagtatgtctactcttgtaaactgtgttgacagag 594
Query: 181 taagtaagaaacatgcagcttcgtaagccccagggaaactctagctgcatttttgtttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 taagtaagaaacatgcagcttcgtaagccccagggaaactctagctgcatttttgtttat 534
Query: 241 tttactttggttctaatgaaaatggtgtgacatgatttaaaatacaacaagacattaaaa 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tttactttggttctaaggaaaatggtgtgacatgatttaaaatacaacaagacattaaaa 474
Query: 301 taatgaataaaagtaaggcaactactgcaatgaaaaaaggcaggattgagggagaaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 473 taatgaataaaagtaaggcaactactgcaatgaaaaaaggcaggattgaggaagaaacta 414
Query: 361 accatggtctcgatgtctaaatgctgtggggtttttttcctgtggtgagaacacaaatga 420
|||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 413 accatggtctagatgtctaaatgctgtggggtttttt-cctatggtgagaacacaaatga 355
Query: 421 atgaaataagttagctgtgagtaatgccctcttgtaagactgtaagaccatgaaaaggcc 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 354 atgaaataagttagctgtgagtaatgccctctcgtaagactgtaagaccatgaaaaggcc 295
Query: 481 ttggattcttctcttatccactctaagaacagttgctattgcctagttatcttcagcatt 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgggttcttctcttatccactctaagaacagttgctattgcctagttatcttcagcatt 235
Query: 541 ttgcaaggactatgtatatacgaattattatgtg 574
||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgcaaggactatgtatatacgaattattatgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
