Query= MSMg01no350_e14.b1 MSMg01no350_e14.b1 CHROMAT_FILE:
MSMg01no350_e14.b1 PHD_FILE: MSMg01no350_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
(441 letters)
>mm_chr5_5443070_5443911
Length = 842
Score = 832 bits (430), Expect = 0.0
Identities = 439/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 1 ttataagttacacgtggaagttactaattctgaggcacctgaagcagttgttcaacgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttataagttacacgtggaagttactaattctgaggcacctgaagcagttgttcaacgtct 583
Query: 61 ccaggccttgatttcttatcttcgatggagctcacataagaatat-ccctggaatatagc 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 582 ccaggccttgatttcttatcttcgatggagctcacataagaatatcccctggaatatagc 523
Query: 120 acacaatcagggaagggtagctctgagattggggaagagccaggcatggtactaactggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acacaatcagggaagggtagctctgagattggggaagagccaggcatggtactaactggc 463
Query: 180 acagaataggaagaactctgaaccaggaagatctcagatggcttttgcttctatcatttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acagaataggaagaactctgaaccaggaagatctcagatggcttttgcttctatcatttt 403
Query: 240 tctttgttttgtttgctatttaagataattacttaaactattgagttctccctggatgaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctttgttttgtttgctatttaagataattacttaaactattgagttctccctggatgaa 343
Query: 300 aggagaaaatgttgaaaaagttgtctgagaaatgagcactatatgtaaaatactgttcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 342 aggagaaaatgttgaaaaagttgtctgagaaatgagcactatatgtaaaatactgtttta 283
Query: 360 gtaactgattcttagtaggtgctttataaatgaccctattttagctctctgaacctatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtaactgattcttagtaggtgctttataaatgaccctattttagctctctgaacctatta 223
Query: 420 tgccatcgtaattctgtgagaa 441
||||| ||||||||||||||||
Sbjct: 222 tgccaccgtaattctgtgagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_e14.g1 MSMg01no350_e14.g1 CHROMAT_FILE:
MSMg01no350_e14.g1 PHD_FILE: MSMg01no350_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
(467 letters)
>mm_chr5_5293997_5294863
Length = 867
Score = 888 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Plus
Query: 1 agaaattttaaaatgtataagtaaggaaactaccagaaaaaaacagggctggatattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattttaaaatgtataagtaaggaaactaccagaaaaaaacagggctggatattttt 260
Query: 61 ctcatctcagcataaggaaaacttgtcataagaccccagccccagaaactataaaaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatctcagcataaggaaaacttgtcataagaccccagccccagaaactataaaaaact 320
Query: 121 cagataaatatgaaaaagaatctgtacataaacatatacatgtgaaagaaagtataaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagataaatatgaaaaagaatctgtacataaacatatacatgtgaaagaaagtataaagt 380
Query: 181 ggaaaagaattatttgctatatgtatatatcatgtatatgtcaaaggttattgttcatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaagaattatttgctatatgtatatatcatgtatatgtcaaaggttattgttcatag 440
Query: 241 caaaacgacaggctcttaagagaaaaactgttcaataaaattggcaaaatataaaaacag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaatgacaggctcttaagagaaaaactgttcaataaaattggcaaaatataaaaacag 500
Query: 301 attatgcacacaaatgatagtttgcttgtttagttcaaactcattatgaattaattagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatgcacacaaatgatagtttgcttgtttagttcaaactcattatgaattaattagaa 560
Query: 361 acaaaaggtaaaatactagtattacagagcaagttcaaggacaggcagagctacacagat 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaagctaaaatactagtattacagagcaagttcaaggacaggcagagctacacagat 620
Query: 421 aaaccctaaaaccctatctcaaagaaaaaaaaatttcctctgacgat 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccctaaaaccctatctcaaagaaaaaaaaatttcctctgacgat 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
