NNNNTTCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGTGGATTACGAACTAGACTAGGTCCAGCCAGATCCT
TGAGAGCAAGGTCCTGGTGTCTTCTGGTGGCAACTGAAGAAAGACAGGTA
CCTTTTCCTCACATGGCTCTCAGCTGGGCCACTGGCTCTGACCCCAGATG
AGTGTGTAGAGCCACATCTTCCCATAGCTATCTCCTTCGTTGTGTTTCTG
TTTGTCAGCAGTAACACAGGCCCTGCCTCCTGCCTCCCCAAGGACCATAG
GAAGGTATAAGTACCAGCAGGTTACGTTTTGTTGTCACTTGAGGCTGCAC
ACCAAAGACAATGAACTAGACACCAGCTCTGCAGCAATGGTCCAGACCTG
AGAGGGCAGCAGCTAAGGGAAGCAGCCAGACTGTGTTTTTAAATGTTTAT
TTTATTTTAATTAATTATTCTATTCTCTATTTTATTTTGATGTTGCGAAC
AAGACCTGACAGACAATGTGAGGGAATGTCCAGCCTTTGGCATAAAGATG
GGATCCTCACAACAGGAAAATAAAAACAGGGCCAGCCCCCCCCTGGAAAA
GGGTTTACTCCCCGGTAGGATTTTAATAAGGAGAAACCCCCGAAAACCCG
GTCTTGTTTGGGAAAAATTGAAACAACCCTCCCCAAGAACCCCCCCTTTT
TTTTCATAACCCATCTCGGGAAAAAAACCCTCTCCCGGCTTTGTAAAAAA
AGAAAGAGTTTTTTTTGGGGAGG

NTTTTTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACAAATTCTACT
GACAGCCGGGCGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGCA
GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT
TCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAAATCTACTGAAACTCAAAAAAATTATT
AAATAAAAGATTGACAATCATTTTAGAAAAATTTAACATAAACTTGATTG
TTAAATGAATACATCACAAATTAGTAAAATATATAAAATTAATGTGTATA
AGTATTTTGCCTGAATATATGTGTGTGCATGATGTACATGCCTGGTGCCA
CAGAGGTTAGAAGAGCCATTTCCCTAGCCCCCTAACTATGTTTTTAAATA
GCTATACTTAATGCCCACATAATACTTTTAGGCTCAGTAATTATGGGCTA
AAGAGATGGCCTAATATCTATGAAACTTGTGGTGGCTGGTTCGGAATAAA
TGGACTGGTGGACTAATCCCCACCCTCTCCATAATGGGTATTGGTGTTGG
AATTATGTTACTCATAATACCCGCTCTTCCCCTCTTCTTAACTTTTTCTT
CCCGCCCCTGTGTGATTATTTTTTCTTTTTTTTTATTCCTGCCCTCCTGG
TGTCCCCCCCTTCTTTCCCCTTCCTATTCTCT

Query= MSMg01no350_e24.b1 MSMg01no350_e24.b1 CHROMAT_FILE:
MSMg01no350_e24.b1 PHD_FILE: MSMg01no350_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:12 2005
         (411 letters)



>mm_chr5_110916148_110916958
          Length = 811

 Score =  741 bits (383), Expect = 0.0
 Identities = 404/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactaggtccagccagatccttgagagcaaggtcctggtgtcttctggtggcaactgaag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 556 gactaggtccagccagatccttgagagcaaggtcctggtgccttctggtggcaactgaag 497

                                                                       
Query: 61  aaagacaggtaccttttcctcacatggctctcagctgggccactggctctgaccccagat 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaagacatgtaccttttcctcacatggctctcagctgggccactggctctgaccccagat 437

                                                                       
Query: 121 gagtgtgtagagccacatcttcccatagctatctccttcgttgtgtttctgtttgtcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagtgtgtagagccacatcttcccatagctatctccttcgttgtgtttctgtttgtcagc 377

                                                                       
Query: 181 agtaacacaggccctgcctcctgcctccccaaggaccataggaaggtataagtaccagca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtaacacaggccctgcctcccgcctccccaaggaccataggaaggtataagtaccagca 317

                                                                       
Query: 241 ggttacgttttgttgtcacttgaggctgcacaccaaagacaatgaactagacaccagctc 300
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggttacgttttggggccacttgaggctgcacaccaaagacaatgaactagacaccagctc 257

                                                                       
Query: 301 tgcagcaatggtccagacctgagagggcagcagctaagggaagcagccagactgtgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgcagcaatggtccagacctgagagggcagcagctaagggaagcagccagactgtgtttt 197

                                                              
Query: 361 taaatgtttattttattttaattaattattctattctctattttattttga 411
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 196 taaatgtttattttattttaattaattattctattctctactttattttga 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_e24.g1 MSMg01no350_e24.g1 CHROMAT_FILE:
MSMg01no350_e24.g1 PHD_FILE: MSMg01no350_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:12 2005
         (375 letters)



>mm_chr5_110744064_110744838
          Length = 775

 Score =  632 bits (327), Expect = 0.0
 Identities = 357/375 (95%), Gaps = 14/375 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcacaaattctactgacagccgggcgtggtggcgcacgcctttgatcccagcacttgg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 actcacaaattctactgatagccgggcgtggtggcgcacgcctttgatcccagcacttgg 274

                                                                       
Query: 61  gaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcca 120
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 275 gaggcagaggcaggtggatttctgagtttgaggccagcctggtctacaaagtgagttcca 334

                                                                       
Query: 121 ggacagccagggctacacagagaaaccctgtctcgaaaaaaccaaaaaaaaaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||| |||||||             ||||
Sbjct: 335 ggacagccagggctacacagagaaaccctgtctcg-aaaaacc-------------aaaa 380

                                                                       
Query: 181 aaaaaaaaaaatctactgaaactcaaaaaaattattaaataaaagattgacaatcatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaaaatctactgaaactcaaaaaaattattaaataaaagattgacaatcatttt 440

                                                                       
Query: 241 agaaaaatttaacataaacttgattgttaaatgaatacatcacaaattagtaaaatatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaaatttaacataaacttgattgttaaatgaatacatcacaaattagtaaaatatat 500

                                                                       
Query: 301 aaaattaatgtgtataagtattttgcctgaatatatgtgtgtgcatgatgtacatgcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aaaattaatgtgtataagtattttgcctgaatatatgtgtgtgcatgatgtgcatgcctg 560

                          
Query: 361 gtgccacagaggtta 375
           |||||||||||||||
Sbjct: 561 gtgccacagaggtta 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)