Query= MSMg01no350_i05.b1 MSMg01no350_i05.b1 CHROMAT_FILE:
MSMg01no350_i05.b1 PHD_FILE: MSMg01no350_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:27 2005
(241 letters)
>mm_chr5_10582763_10583402
Length = 640
Score = 451 bits (233), Expect = e-131
Identities = 239/241 (99%), Gaps = 1/241 (0%)
Strand = Plus / Minus
Query: 1 ggaaagggtgaggtgtttgtttaatgttaaacaaatatgatatggcatatttattggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaaagggtgaggtgtttgtttaatgttaaacaaatatgatatggcatatttattggatt 381
Query: 61 caaattacttttacattttttaatgcccagagggttaaaactaaggtaatgaggtgagga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaattacttttaca-tttttaatgcccagagggttaaaactaaggtaatgaggtgagga 322
Query: 121 gtacttgtgatatatttaattaaaaactatggatagttaataagtttggtgacgtttttt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gtacttgtgatatatttaattaaaaactatggatagctaataagtttggtgacgtttttt 262
Query: 181 aaagtatggggtttttgcccacatacttcaataactaaaggaagttgcattatgtaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtatggggtttttgcccacatacttcaataactaaaggaagttgcattatgtaagga 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space: 146392
Effective search space used: 146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_i05.g1 MSMg01no350_i05.g1 CHROMAT_FILE:
MSMg01no350_i05.g1 PHD_FILE: MSMg01no350_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:27 2005
(419 letters)
>mm_chr5_10411195_10412015
Length = 821
Score = 723 bits (374), Expect = 0.0
Identities = 409/422 (96%), Gaps = 4/422 (0%)
Strand = Plus / Plus
Query: 1 tttattcaggctacacattctattttcttaactggaagttatttttctgctctaacaaaa 60
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 201 tttattcaggctacacattctattttctcaactagaagttatttttctgctctaacaaaa 260
Query: 61 taaccttctagaaattaatgtctgtggagaataggagtgtttttaagcactcttcagtct 120
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaccatctaaaaattaatgtctgtggagaataggagtgtttttaagcactcttcagtct 320
Query: 121 cttattatctt---atttatgtgttgtgagtttttgtattaaatattattcactgaaata 177
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttattatctgcacatttatgtgttgtgagtttttgtattaaatattattcactgaaata 380
Query: 178 agaatcttctagcgtgagggctgggtaatgctttaatcatgccctaaatcctaagattca 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 agaatcttctagcgtgagggctgggtaatgctttaatcatgccctaaaccctaagattca 440
Query: 238 tggatgtttgtgtaagaggggttggaaaaattataagagactgagctggtggataagtgc 297
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatgtttgtggaagaggggttggaaaaattataagagactgagctggtggataagtgc 500
Query: 298 aaggaagcagtgctttacataaacaagagggcagatgtacaaatgaactaaagatactgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaagcagtgctttacataaacaagagggcagatgtacaaatgaactaaagatactgt 560
Query: 358 gacagattgcttaagacctattcaagctcaaatcagacaaattccaaacatgaaacttgg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cacagattgcttaagacctattcaagctcaaatcagacaaattccaaacatgaa-cttgg 619
Query: 418 ga 419
||
Sbjct: 620 ga 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 821
Length adjustment: 9
Effective length of query: 410
Effective length of database: 812
Effective search space: 332920
Effective search space used: 332920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
