BAC Information

Click to search

BAC

Clone NameMSMg01-350P07
Chromosome5 (Build37)
Map Location 25,211,518 - 25,211,877
singlet/doubletsinglet
Overlap geneXrcc2
Upstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
Downstream geneLOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350P07.T7 (MSMg01no350_p07.b1)MSMg01-350P07.TJ (MSMg01no350_p07.g1)
ACCAG462443AG462444
length859761
length of high quality
(start - end)
---351 (85 - 435)
definitionCHROMAT_FILE: MSMg01no350_p07.b1 PHD_FILE: MSMg01no350_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:04 2005CHROMAT_FILE: MSMg01no350_p07.g1 PHD_FILE: MSMg01no350_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAAAT
CCGCGGAATTCTTCCTTTCCCCAAATACAAATGCAGAGTACCGGAATTAC
CACTGTGGGGATTAACACAATCCCCAGAATACAGGGTTTCAATAGTACAG
CCCTGACAGGTCTGGGATCTGTAACCCTTCCTCCGCTCATCAGCAAAGGC
TAGGCCAGCTTCACATTTCAACTAAATTTCTCCTGTATACTACATCGCAC
TGTGCATTTTTATCATTTTATTTCTTCTTCCTCCCCTTCTCCTCCCTCTC
CCCTGTTTTCTCACAGTACCCCTGTTTTGTTCTGTAACTTCCCCTTGTAT
TCCTCCTTGGTTCTCTTCTCCCACTTGCTTTATGCCTATTCTCTTTTATG
TATTGATTCTTACATTGCAAATAGTCCCCCCCTTTTAATATATTACTCCT
TACTCCTTCTAAATTCTTCTTTTTATTCTCTGCTTACTCTCACCTTTATC
ATACAAGTACTCTTTTTTATACATTCCCATTATCTTTCATTTGCTTTACC
TCATACTTATCTTAATATTACATTCTATCAGCGTACTTTTATATTCACAC
GTTTTTTGTCACCCCGTTTTTTTTTTCTTTCCCTCTACCATACCCTTTTT
CTTTCTCGCCTCGCCTTTTTATATTCATGCTTCATATGATATTATGAATT
ACTTCTCTATTTTGATTTTCCCTTCTATATTGTCTTCCCTTCCCTATCAT
TCCTTTTTCATCTCCTCTCATTTTCTTACCCGCTGACTACCCTTATTACT
CTTTTCTACTCCCCGCTATTACCCTTATTTACGTTCAGACTTATCGTTCC
TTGCACTCT
NTTTTTAGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCACGGCT
ACATAGGAAGCTCGTCTCTTTAAAAAAAACTAAATGAAATTTAGAAATCA
CGTACATGTTAATTTTGCCTGATAAAGACAAATCGAGATGAGTAACAAAA
GATAACATAAGGACCATAAGGACTAAAGGAAACGCAGGAGACTGGCGTCA
CCAAGAGGGCGCCGCAGCTTTACTGCGCATGCCCTCGGCTTCTCTGGCTC
TGAGCCCGCACAGTGCGCACGCGCACACAGGGTCATTGCTTTGACTGGCT
GCGTCTTTCGCGCTTTTGCTAAATGGCGTTGCTGGCGGGTAGGTTGAACC
CGCGGAGCTGGCCGGGCGATGTGTAGCGACTTTCGCAGAGCGGAATCCGG
GACGGAGGTGAGAGCCGCGGTGCGACGGTAGGTTCGCGCACTACAGGGGG
AGGTCTTTGAGTGTTCTCCATCGCCATCGTGCTCAGTTACAATATGCATC
TAACGTATTCGTCATTTACTTACCTCTATGTATTTTTTAACTTCTTTCAT
CCCATTATCTATTCTTCTTTTTTTACACTCTACCTCTCCTTTTCTCTCTC
TCCCTTTCTCGTTCCCCTATTTTTCTATCTTTTTTCTTTTTTATTCCAGC
CCCCACTTTTTCTTACTAATTACCCTCCTCTTTCCTTTCACCCTCCCTTC
CACTCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_p07.g1 MSMg01no350_p07.g1 CHROMAT_FILE:
MSMg01no350_p07.g1 PHD_FILE: MSMg01no350_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:04 2005
         (351 letters)



>mm_chr5_25211279_25212029
          Length = 751

 Score =  567 bits (293), Expect = e-166
 Identities = 340/363 (93%), Gaps = 15/363 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccacggctacataggaagctcgtctctttaa-----------aaaaaactaa 49
           ||||||||||||| |||||||||||| |||||||  |||           ||||||||||
Sbjct: 599 caggacagccacgactacataggaagttcgtctc--taaaaaacaaaaacaaaaaactaa 542

                                                                       
Query: 50  atgaa-atttagaaatcacgtacatgttaattttgcctgataaagacaaatcgagatgag 108
           || || |||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 541 at-aagatttagaaatcacgtacatgttaattttgcctgataaagacccgtcgagatgag 483

                                                                       
Query: 109 taacaaaagataacataaggaccataaggactaaaggaaacgcaggagactggcgtcacc 168
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taactgaagataacataaggaccataaggactaaaggaaacgcaggagactggcgtcacc 423

                                                                       
Query: 169 aagagggcgccgcagctttactgcgcatgccctcggcttctctggctctgagcccgcaca 228
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 422 aagagggcgccgcagctttactgcgcatgccctcggcttctctggctccgagcccgcaca 363

                                                                       
Query: 229 gtgcgcacgcgcacacagggtcattgctttgactggctgcgtctttcgcgcttttgctaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgcgcacgcgcacacagggtcattgctttgactggctgcgtctttcgcgcttttgctaa 303

                                                                       
Query: 289 atggcgttgctggcgggtaggttgaacccgcggagctggccgggcgatgtgtagcgactt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atggcgttgctggcgggtaggttgaacccgcggagctggccgggcgatgtgtagcgactt 243

              
Query: 349 tcg 351
           |||
Sbjct: 242 tcg 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)