Query= MSMg01no351_g13.b1 MSMg01no351_g13.b1 CHROMAT_FILE:
MSMg01no351_g13.b1 PHD_FILE: MSMg01no351_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:39 2005
(522 letters)
>mm_chr5_141842205_141843125
Length = 921
Score = 948 bits (490), Expect = 0.0
Identities = 514/522 (98%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 1 catgggaaaagttaagtgtggtggtctgtgtttattatcccagtgctggagtggaagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 catgggaaaagttaagtgtggtggtctgtgtttattatcccagtgctggagtggaagtgg 261
Query: 61 gaggatttcttagtcttgctagccagttagcctagcctacttggtaagcttaggtgagtg 120
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 262 gaggatttcttagtcttgctagccagttaccct-gcctacttagtaagcttaggtgagtg 320
Query: 121 agagagaccctgctttaaaaatacaggggctcatcttctgaggaatgacaacaggattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agagagaccctgctttaaaaatacaggggctcatcttctgaggaatgacaacagggttgg 380
Query: 181 tgtctgtcttccataagcaggtacatatgtacgtctgccccacccctccacaaaaccttt 240
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 381 tgtctgtcttccataagcaggtacatatgtacgtctg-cccacccctcaacaaaaccttt 439
Query: 241 gggaagtagttcttctcatcttaccttataagtaaaatataccttactacaaatctgcaa 300
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 gggaagtagttcttcccatcttaccttataagtaaaatataacttactacaaatctgcaa 499
Query: 301 caatacaacaataaagataaaagtatgccctggaaaatcatctttctgaagttagaggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caatacaacaataaagataaaagtatgccctggaaaatcatctttctgaagttagaggtt 559
Query: 361 ctatatataaatgagtgagacactgttcacatcccatgaatgcaacctggaaatgtacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatatataaatgagtgagacactgttcacatcccatgaatgcaacctggaaatgtacta 619
Query: 421 ttctggcctcaagtcaggcataaaggccgtgcatgtgcatacacaggtacatgtacactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctggcctcaagtcaggcataaaggccgtgcatgtgcatacacaggtacatgtacactt 679
Query: 481 cacagtgtgcacatgtgcacttcacagtgtatacttcacagt 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacagtgtgcacatgtgcacttcacagtgtatacttcacagt 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space: 466432
Effective search space used: 466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_g13.g1 MSMg01no351_g13.g1 CHROMAT_FILE:
MSMg01no351_g13.g1 PHD_FILE: MSMg01no351_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:39 2005
(550 letters)
>mm_chr5_142011170_142012119
Length = 950
Score = 777 bits (402), Expect = 0.0
Identities = 429/438 (97%)
Strand = Plus / Minus
Query: 4 catttacagaccagagcatgggcctgttttcagctttctgttactagtgtaagaatggct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catttacagaccagagcatgggcctgttttcagctttctgttactagtgtaagaatggct 379
Query: 64 gtatggctgctgcagctccttctccggctggagagttgatggtttgtcccctgctgcgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 gtatggctgctgcagctccttctccggctggagagttgatggtttgtcctctgctgcgtg 319
Query: 124 gcctgtgtgtttacacttgtgaatgacacgctcagacctttctcatttctcctcaactat 183
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct: 318 gcctgtgtgtttacacttgtgaatgacacgctccgacctttctcatttccccttaactat 259
Query: 184 tacaatctctttcatggttttctgttgcctcgtggtattttatattttttcaagatttat 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacaatctccttcatggttttctgttgcctcgtggtattttatattttttcaagatttat 199
Query: 244 tttgtgtatgtaagtgtttcgtttgcatgtatgtgtgcaccacagccatgcctggtgcct 303
||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 198 tttatgtatgtaagtgtttcatttgcatgtttgtgtgcaccacagccatgcctggtgcct 139
Query: 304 ttggaggtcagaagacagtgctggatcccctgaaacttatggatggttgtaaaccaccat 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 138 ttggaggtcagaagacagtgctggatccactgaaacttatggatggttgtaaaccaccat 79
Query: 364 ggtgctaggaactgaacctgggtcctctgaaagaacaacaaatgcccttcagctctgagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ggtgctaggaactgaacctgggtcctctgaaagaacaacaaatgcccttcagctctgagc 19
Query: 424 cctcacttaagcccgttt 441
||||||||||||||||||
Sbjct: 18 cctcacttaagcccgttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
