Query= MSMg01no351_l22.b1 MSMg01no351_l22.b1 CHROMAT_FILE:
MSMg01no351_l22.b1 PHD_FILE: MSMg01no351_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:04 2005
(448 letters)
>mm_chr5_41274979_41275826
Length = 848
Score = 704 bits (364), Expect = 0.0
Identities = 385/392 (98%)
Strand = Plus / Minus
Query: 5 gaattctccctcccaggctcccttcagtttgtataaagttaaagatgaagctttaaggac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattctccctcccaggctcccttcagtttgtataaagttaaagatgaagctttaaggac 718
Query: 65 tctctgagactcctgagttattcacttccctaagccttgaaacttttgcttacttccttc 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tctctgagactcctgagttagtcacttccctaagccttgaaacttttgcttacttccttc 658
Query: 125 actttgatgaggttttctccagcgcagaatgtttccattaggaagaaattgctgcacaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actttgatgaggttttctccagcgcagaatgtttccattaggaagaaattgctgcacaac 598
Query: 185 acaccaacaagttattctcattagcagagaaaagttagaacgaaaaataagatgatgaaa 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acaccaacaagttattctcactagcagagaaaagttagaacgaaaaataagatgatgaaa 538
Query: 245 taaagagtcacacgttttaatgaatacatgaattagtctggtacaataaattgaacttga 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 537 taaagagtcacacgttttaatgaatgcatgaattagtctggtacaataaattgaacttga 478
Query: 305 gaggcaacgtttttgcaattattaatctcaagagttaggatagatgtggttaggtgtatg 364
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 477 gaggcaatgtttttgcaattattaatctcaagatttaggatagatgtggttaggtgtata 418
Query: 365 tgtgtgtcctatttaaaggacaacattttttt 396
||||||||||||||| ||||||||||||||||
Sbjct: 417 tgtgtgtcctatttacaggacaacattttttt 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_l22.g1 MSMg01no351_l22.g1 CHROMAT_FILE:
MSMg01no351_l22.g1 PHD_FILE: MSMg01no351_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:04 2005
(433 letters)
>mm_chr5_41132185_41133017
Length = 833
Score = 673 bits (348), Expect = 0.0
Identities = 403/434 (92%), Gaps = 23/434 (5%)
Strand = Plus / Plus
Query: 1 tttgagaggccaaagcatatcacccaggcctagttctctctggaaaaacatgaggattaa 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tttgagaggccaaagcatatcacccaggcctagatctctctggaaaaacatgaggattaa 260
Query: 61 gtaacacacagtgaaggcttgtctttaatctttagggctggtctatttaccttcgagtgt 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtaacacacagtgaaggcttgtccttaatctttagggctggtctatttaccttcaagtgt 320
Query: 121 tctatttgaaacacattaaataatctgcatataggaagtaatagagaagtatgtaagaca 180
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatatgaaacatattaaataatctgcatataggaagtaatagagaagtatgtaagaca 380
Query: 181 ggtatatacatacatatatatatatatacatatatatatatgtcttagtaatatatgggg 240
|||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 381 ggtatata------tatatatatatat--------------gtcttagtaatatatgggg 420
Query: 241 gtgttaaatttgtgtgtgtgtgtgtctagtttattctcaaatactaaaaatttctagtaa 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 421 gtgttaaatttgtgtgtgtgtgt--ctagtttattctcaaatactaaaaatttctagaaa 478
Query: 301 cgatatgtaaatatttactgaaaaaa-tgagtacctgctattttctttgtagattatctg 359
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 479 caatatgtaaatatttactgaaaaaaatgagtacctgctattgtctttgtagattatctg 538
Query: 360 ctacacatgaaccatatcttaaaaagaaactgaacaaatgatttgttgatagaactatca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctacacatgaaccatatcttaaaaagaaactgaacaaatgatttgttgatagaactatca 598
Query: 420 tctatagtaagtgc 433
||||||||||||||
Sbjct: 599 tctatagtaagtgc 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
