BAC Information

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BAC

Clone NameMSMg01-351P11
Chromosome5 (Build37)
Map Location 83,672,854 - 83,673,279
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P11.T7 (MSMg01no351_p11.b1)MSMg01-351P11.TJ (MSMg01no351_p11.g1)
ACCAG463210AG463211
length737936
length of high quality
(start - end)
430 (55 - 484)---
definitionCHROMAT_FILE: MSMg01no351_p11.b1 PHD_FILE: MSMg01no351_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:20 2005CHROMAT_FILE: MSMg01no351_p11.g1 PHD_FILE: MSMg01no351_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAATGTTTCACAGTGAAAAGTTCCTAGACATGCTGTC
CTGATACTATATAATAAAAATAAGGATTTGGAAGATGAATGGATGGCTCA
AAGAGTCGGGACACTCATTTTACTTGCAGAGGACCAGGTGATTCACATTG
TGTCTTACAGTCATCCACAATGCTAGTTTCATGATGTTCTTGGCCTCTGA
GGACACAAGACATGTAAGTGGTATGCATTTATATGGGCAATATAAATAAT
ACAATAATTTTATTTTTAAATAAATACAAAGAATACATATAAATAATGAA
ATATAAAATTGTAGCTTGTGTGTAGGCACTTGCTTCTACACATTTCACAG
ATGAGCAGATGGGCATGCTACATTTTGTATTAAATCCACTGAAGGATACA
ATAACATTATATTCCAAATTACTTGTTTAGTACATTGCAGAATTTAAATT
CTTCCTCTGCTTTTTAAATATTTATTTTTAGTACTATATGCTCTTAGTTG
TAGATTTATACCCAATGGAGCCTGTCTTAATTGAATAGTTCATTGTCCCT
AATTGTAGAACTGAAAAAAAATTCTTAATTTTTTGATGGACAAAATTCCT
TTTGATGTAATACCATTTTTAACATAGTATGGAATTACTTTCTTTCGGAA
ATTACAGTATTTTTATTGACAAAAAGAGAAAAATTCC
GGGGGAGGGAATCGTGGGGCCCTTCGTAGGNGANACGGTCGATTCACGAA
AACTACAAGGAATCAAAAGAAGGATTATGGGGAGGTACCCACAGTGAATA
CAGGGACAGTGCGTGAGTGAGCGTGCTCAACCCTATTCGTAAATTGTTTA
GATGAGTAAGGTTAAGTGTGGAGTGGACATATGGGGTGAGGGATGGTGAT
AGATATGTTGATTGGTGTGGTGGGTGGGTGTAGAGGGAAGAGTTGACAGT
TCGCTTAGTAGGAGTGAGGAGATCTTTCTATTATTTGAATCATGGCAGGA
GTATTCACATTAGATTCACTAGTTGTTAATTATGTCATTCAAATAATATT
ATATATATTGCAACTATATATGCTGAGAAGCTGGTGGGTGGGGATGTGGG
TGGTCAATGAGTCGAAATATAATTATGATGTAAGAGTTATTTACGTTCTT
ATGACCTACCTGCTATATATATGGTAAATAATCTCAGCTATAGCGTTAAT
TTGAATTTGTGTTATGTATTAATGTGAGCACACGATAACTATAATCAATA
ATGGAGAATAAGATGATTATCGCAGGAAGTGGTTGTGTGGGGAATGAATT
TTGCACTTATTTGTATTGTATGTTATGATATTTATCAGATATTCACTGAA
TATATGTAGGTGAGTTAATGTATGGTGTGGGGATAAAGGAGAGAGTATCG
AGACAATTACTTTGAGTGTGGCTTATTGATTGATGTTGTAACAGATATGC
AGTAGGAGGTGCAATGTGCCCGGGTCTGGTGGAGGCTTGTATCATAACGA
ACCGCTATCCCTTATTAATATACTTAAGGGGAGAGCTATAGTGGAGATGG
GGGGGAGGGGAGCGTGCGGATAAAACATAATTGCACATAAGATATGGAAT
TCAAATCAACACATCATTCGGACAGGAGATCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p11.b1 MSMg01no351_p11.b1 CHROMAT_FILE:
MSMg01no351_p11.b1 PHD_FILE: MSMg01no351_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
         (430 letters)



>mm_chr5_83672846_83673675
          Length = 830

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgtttcacagtgaaaagttcctagacatgctgtcctgatactatataataaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattcaatgtttcaaagtgaaaagttcctagacatgctgtcctgatactatataataaa 375

                                                                       
Query: 65  aataaggatttggaagatgaatggatggctcaaagagtcgggacactcattttacttgca 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aataaggatttggaagatgaagggatggctcaaagagtcgggacactcattttacttgca 315

                                                                       
Query: 125 gaggaccaggtgattcacattgtgtcttacagtcatccacaatgctagtttcatgatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 314 gaggaccaggtgattcacattgtgtcttacagtcatccacaatgctaatttcatgatgtc 255

                                                                       
Query: 185 cttggcctctgaggacacaagacatgtaagtggtatgcatttatatgggcaatataaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttggcctctgaggacacaagacatgtaagtggtatgcatttatatgggcaatataaata 195

                                                                       
Query: 245 atacaataattttatttttaaataaatacaaagaatacatataaataatgaaatataaaa 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 194 atacaataattttatttttaaataaataaaaagaatacatataaataatgaaatataaaa 135

                                                                       
Query: 305 ttgtagcttgtgtgtaggcacttgcttctacacatttcacagatgagcagatgggcatgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttgtagcttgtgtgtaggcacttgcttctacacatttcacagatgagcagatgggcatgc 75

                                                                       
Query: 365 tacattttgtattaaatccactgaaggatacaataacattatattccaaattacttgttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tacattttgtattaaatccactgaaggatacaataacattatattccaaattacttgttt 15

                 
Query: 425 agtaca 430
           ||||||
Sbjct: 14  agtaca 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)