Query= MSMg01no352_a05.b1 MSMg01no352_a05.b1 CHROMAT_FILE:
MSMg01no352_a05.b1 PHD_FILE: MSMg01no352_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
(564 letters)
>mm_chr5_127223860_127224824
Length = 965
Score = 977 bits (505), Expect = 0.0
Identities = 547/566 (96%), Gaps = 14/566 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagcac----attacctcaagtaaggagaaattttgtttgtggcctcattcaca 59
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcagcacaggaat----tcaagtaaggagaaattttgtttgtggcctcattcaca 615
Query: 60 ggttcatgctgggctagcttttttatccagccaatgacaacctgtctaaggaatggtgct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggttcatgctgggctagcttttttatccagccaatgacaacctgtctaaggaatggtgct 555
Query: 120 acccatggtgggcagtacccccaagttgctgcagttctgcatattctttacaaaacattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acccatggtgggcagtacccccaagttgctgcagttctgcatattctttacaaaacattt 495
Query: 180 tcatgttttccctgtgtttttgattttggggattttctgctg-taaatctttgagtcagt 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 494 tcatgttttccctgtgtttttgattttggggattttctgctgttaaatctttgagtcagt 435
Query: 239 aacctagcatgaaatgtatgatttgaggtcatctcacatatatagcttgtatttttagaa 298
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 434 aacctagcatgaaatgtatgatttgaggtcatctcacacacatagcttgtatttttagaa 375
Query: 299 actcaactcgtcaccaatttaagttctatttgtcatgaccacatttattgtttatactac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actcaactcgtcaccaatttaagttctatttgtcatgaccacatttattgtttatactac 315
Query: 359 agtttgtttgttttttaatgtatatggtactaccacgatgaaagataaatctctgatagt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtttgtttgttttttaatgtatatggtactaccacgatgaaagataaatctctgatagt 255
Query: 419 gtttcacagataggttatctgtgacctctggtttttacttacttgtttttattttttatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtttcacagataggttatctgtgacctctggtttttacttacttgtttttattttttatt 195
Query: 479 tccctttttatttcttcttcctttctttctttctttctttccttctttcnttctttcttt 538
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 194 tccctttttatttcttctttctttctttctttctttctttctttctttctttctttcttt 135
Query: 539 ctttccttctttctttctttcttctt 564
||| |||||| ||| ||| ||||||
Sbjct: 134 ctt--cttctt-ctt-ctt-cttctt 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space: 529070
Effective search space used: 529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_a05.g1 MSMg01no352_a05.g1 CHROMAT_FILE:
MSMg01no352_a05.g1 PHD_FILE: MSMg01no352_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
(398 letters)
>mm_chr5_127050669_127051466
Length = 798
Score = 727 bits (376), Expect = 0.0
Identities = 394/400 (98%), Gaps = 2/400 (0%)
Strand = Plus / Plus
Query: 1 ctatcttcaggcttttggagcaagca-tctgacccagtgaggcctctgcccagccctcta 59
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 199 ctatcttcaggcttttggagcaagcactctgacccagtgaggcctctgcccagccctcta 258
Query: 60 cataattgtaagtatggcgattactgtacattttgataatggcagctttaaaatctgcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cataattgtaagtatggcgattactgtacattttgataatggcagctttaaaatctgcca 318
Query: 120 tctgatgccaatgtctgctccctctgggctttggaagtgattcacttcctttttatgctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctgatgccaatgtctgctccctctgggctttggaagtgattcacttcctttttatgctt 378
Query: 180 ggggtgaattcttctggttatttgcatagcaaataatgtatcttttaagtctgtattat- 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 379 ggggtgaattcttctggttatttgtatagcaaataatgtatcttttaagtctgtattttt 438
Query: 239 ggtgctatagttgggaaactctgagttctattgctgcgttctgttttgtgtaacagtcat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtgctatagttgggaaactctgagttctattgctgcgttctgttttgtgtaacagtcat 498
Query: 299 cccctatattctgcaaaggaagagataggtaggtcttaagagggtcactgctaggcctct 358
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 499 cccctatattctgcaaaggaagagataggtaggccctaagagggtcactgctaggcctct 558
Query: 359 actgacatcagggggttcatttcagtctcttgggggtatt 398
||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actgacatcagggggttcatttcagtctcttgggggtatt 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
