Query= MSMg01no352_m22.b1 MSMg01no352_m22.b1 CHROMAT_FILE:
MSMg01no352_m22.b1 PHD_FILE: MSMg01no352_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:29 2005
(282 letters)
>mm_chr5_56874915_56875596
Length = 682
Score = 424 bits (219), Expect = e-123
Identities = 225/227 (99%), Gaps = 2/227 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgattcctcc-ggttctgtagccaaattacagagattttcatcagcatttaat 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgattcc-cctggttctgtagccaaattacagagattttcatcagcatttaat 263
Query: 64 attaaattcaaattaaatatttaatttcatcagcattataaaatattgagaagcttttag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attaaattcaaattaaatatttaatttcatcagcattataaaatattgagaagcttttag 323
Query: 124 ctatattcttatgtattttcatttgtgaacttgttgtctaaattcattattatagtctca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatattcttatgtattttcatttgtgaacttgttgtctaaattcattattatagtctca 383
Query: 184 taaatagccttatttaaagcgtttatggatatggcagtatatatata 230
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Sbjct: 384 taaatagccttatttaaagcgtttatggatatggcagtatatatata 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no352_m22.g1 MSMg01no352_m22.g1 CHROMAT_FILE:
MSMg01no352_m22.g1 PHD_FILE: MSMg01no352_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:29 2005
(378 letters)
>mm_chr5_56976337_56977116
Length = 780
Score = 594 bits (307), Expect = e-174
Identities = 356/379 (93%), Gaps = 15/379 (3%)
Strand = Plus / Minus
Query: 3 ggcatttcattctgacctc-aatatactgttgtggtacatattgtatctctactatttct 61
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggcatttcattctgacctcaaatatactgttgtggtacatattgtatctctactatttct 413
Query: 62 gtacccagactccactaattgatttcctgaaaactgcacataattctatattttcatcaa 121
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 412 gtacccagactccactaattgatttcctgaaaattgcacataattctatattttcatcaa 353
Query: 122 tgttcatatcttagtagcccataataatatatacattcgtattaaggaaatttgtataag 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 352 tgttcatatcttagtagcccataataatatatacattcttattaaggaaatttgtataag 293
Query: 182 tcaaccattttctgatatctttactttcacacattctggcttaagagggtatcatttcaa 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 292 tcaaccattttctgatatctttactttcacacattctcgcttaagagggtatcctttcaa 233
Query: 242 taa-ttaacagaacatcagtctatcaattgtgatttatttatctatttatttattcattc 300
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct: 232 taaattaacagaacatcagtctatcaattgcgatttatttatttatttatttatttatt- 174
Query: 301 attcattcattcattcattctcagagctcttatgaagaaaa-aatatagtctatattcca 359
| ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 173 -t----------attcattctcagagctcttatgaagaaaacaatatattctatattcca 125
Query: 360 agaaataatcatccttaaa 378
|||||||||||||||||||
Sbjct: 124 agaaataatcatccttaaa 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 780
Length adjustment: 9
Effective length of query: 369
Effective length of database: 771
Effective search space: 284499
Effective search space used: 284499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
