Query= MSMg01no353_a11.b1 MSMg01no353_a11.b1 CHROMAT_FILE:
MSMg01no353_a11.b1 PHD_FILE: MSMg01no353_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:46 2005
(497 letters)
>mm_chr5_147804491_147805382
Length = 892
Score = 874 bits (452), Expect = 0.0
Identities = 484/504 (96%), Gaps = 16/504 (3%)
Strand = Plus / Minus
Query: 5 gaattcctgggacctggcaggcctgccagttgggacaaggctgagtcacttagggtttgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaattcctgggacctggcaggcctgccagttgggacaaggctgagtcacttagggtttgg 754
Query: 65 ccaggggaaagcccaggtctgcggcagggctgtagtctctagtcattacc---------- 114
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 753 ccaggggaaagcccaggtctgcggcagggctgtggtctctagtcattaccttggggccga 694
Query: 115 -ttgttgtgaggttattcggggactgtcaacagcacagatcgtctttccctaaatcagag 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 attgttgtgaggttattcggggactgtcaacagcacagatcgtctttccctaaatcagag 634
Query: 174 atcagtgggaaagacttgtctctggctagccagtgagaggttggttgagcaaagatggcc 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtcagtgggaaagacttgtctctggctagccagtgagaggttggttgagcaaagatggcc 574
Query: 234 acagaatcacagtactgaggcacgagtggccgatgtgtgtcacgccacactccaccctgg 293
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 573 acagaatcacagtactgaggcacgagtggccgatgtgtgtcacgcca-----caccctgg 519
Query: 294 agccgcggctgccgttgtaatctaagggatgggactcaggaggcctttcccagtgctgtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agccgcggctgccgttgtaatctaagggatgggactcaggaggcctttcccagtgctgtg 459
Query: 354 cagctgccaggaccacactgccttccaggctggggtatgtgagtaacggcccacctcacc 413
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 458 cagctgccaggaccacactgccttccaggctggggtatgtgagaaacggcccacctcacc 399
Query: 414 tacctttgctctcagtctgtgactctcaggagataggaagcatacaaataagaaccccaa 473
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 398 tacctttgctctcagtctgtgactctcaggaaataggaagcatacaaataagaaccccaa 339
Query: 474 agatctcagagtagcgaggagtta 497
||||||||||||||||||||||||
Sbjct: 338 agatctcagagtagcgaggagtta 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 892
Length adjustment: 10
Effective length of query: 487
Effective length of database: 882
Effective search space: 429534
Effective search space used: 429534
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_a11.g1 MSMg01no353_a11.g1 CHROMAT_FILE:
MSMg01no353_a11.g1 PHD_FILE: MSMg01no353_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:46 2005
(396 letters)
>mm_chr5_147634125_147634920
Length = 796
Score = 735 bits (380), Expect = 0.0
Identities = 392/396 (98%)
Strand = Plus / Plus
Query: 1 aaaccccagcaaccacatggtggcttaccaccacccattgatgagatctgatgccctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccccagcaaccacatggtggcttaccaccacccattgatgagatctgatgccctctt 260
Query: 61 cgggtgtgtctgaagacagttacagtgtacttacatataataaagaaagagaaagaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggtgtgtctgaagacagttacagtgtacttacatataataaagaaagagaaagaaaag 320
Query: 121 gaagaagtagctcctggctccctgcgccccctgccctcagctgggcctagctgagcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaagtagctcctggctccctgcgccccctgccctcagctgggcctagctgagcactg 380
Query: 181 aggtagtgccaggccacagcgtcaatctgaaagggactctgtgctgtgtttttgctgccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtagtgccaggccacagcgtcaatctgaaagggactctgtgctgtgtttttgctgccg 440
Query: 241 atcgctgccgattctggtctacagatctaatgggatagattccagtggcctcacaggaca 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atcgctgccgattctggtctaaagatctaatgggatagattccagtggcctcacagaaca 500
Query: 301 aagaatattcgtctaaaatgagttcaattgttggatactgcatgctgttgtctgtctcaa 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaatattcttctaaaatgagttcaattgttggatactgcatgctgttgtctgtctcaa 560
Query: 361 ctaccctagaggcttcggcaggaggcttgctggagc 396
|||||||||||||| |||||||||||||||||||||
Sbjct: 561 ctaccctagaggctgcggcaggaggcttgctggagc 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
