Query= MSMg01no353_a15.b1 MSMg01no353_a15.b1 CHROMAT_FILE:
MSMg01no353_a15.b1 PHD_FILE: MSMg01no353_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:47 2005
(572 letters)
>mm_chr5_142474324_142475295
Length = 972
Score = 980 bits (507), Expect = 0.0
Identities = 552/567 (97%), Gaps = 2/567 (0%)
Strand = Plus / Minus
Query: 7 gaattcccggccattctcgactacatgagaccctgcccccttacccccatcaccccaaag 66
||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 772 gaattcccggccagcctggactacatgagaccctacccacttacccccatcaccccaaag 713
Query: 67 aaggctgtgccgtcagaaatgacctgtgaagtcagagagcaccattggaaggatttatga 126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaggctgtgccgtcaggaatgacctgtgaagtcagagagcaccattggaaggatttatga 653
Query: 127 cagtggcctctgaacaggtgaaagggaagtacagttagctgaatacacgccaggatttac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cagtggcctctgaacaggtgaaagggaagtacagttagctgaatacacgccaggatttac 593
Query: 187 cctgctcagatttcccagtatctactgctgggacccacaccacccttgctctaggaggac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cctgctcagatttcccagtatctactgctgggacccacaccacccttgctctaggaggac 533
Query: 247 atcaggctcactcacctgcttgtctctgtgctgtactggcccttgcccacttgattcaca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atcaggctcactcacctgcttgtctctgtgctgtactggcccttgcccacttgattcaca 473
Query: 307 gcgcacaccctgaactgataggtccgggctggagtcaagccactcacggtgacgcctgtc 366
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 472 gcgcacaccctgaactgataggtccgggctggagtcaagccactcacagtgacgcctgtc 413
Query: 367 atttccgggccgacatttgacagatgcactttccatggagagtctacaagaatgcacaga 426
|| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 412 atctccgggccaacatttgacaaatgcactttccatggagagtctacaagaatgcacaga 353
Query: 427 gcgagtcagcacacatgagca-tgcatctccacagtgagtggacaagaaccatcctgttt 485
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 352 gcgagtcagcatgcatgagcattg-atctccacagtgagtggacaagaaccatcctgttt 294
Query: 486 gctttcccagatggttctaggagaggcagtgcctagcccacctcataaatgtgcaaagca 545
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gctttcccagacggttctaggagaggcagtgcctagcccacctcataaatgtgcaaagca 234
Query: 546 aggctctccgctgtgtggctagcaata 572
|||||||||||||||||||||||||||
Sbjct: 233 aggctctccgctgtgtggctagcaata 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_a15.g1 MSMg01no353_a15.g1 CHROMAT_FILE:
MSMg01no353_a15.g1 PHD_FILE: MSMg01no353_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:47 2005
(472 letters)
>mm_chr5_142298295_142299166
Length = 872
Score = 874 bits (452), Expect = 0.0
Identities = 467/472 (98%)
Strand = Plus / Plus
Query: 1 caagcttgtgtcaccattcctggctcttttaaccaggttgtggggactgaacttatggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcttgtgtcaccattcctggctcttttaaccaggttgtggggactgaacttatggcc 260
Query: 61 ccatgcttacaagccagcaatttactgactgagccatcactctaccctaattgtgaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ccatgcttacaagccagcaatttactgactgagccatcactctaccctagttgtgaagac 320
Query: 121 tttttattgttaactcttgccatttacagataaaactgatatcactttttcgaatgaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttattgttaactcttgccatttacagataaaactgatatcactttttcgaatgaatc 380
Query: 181 agatgaaatatctaaatgccatcgtgtccagaaatgattgaatccttcaggaatagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgaaatatctaaatgccatcgtgtccagaaatgattgaatccttcaggaatagaaaa 440
Query: 241 tgttctccttgactactagagatggaactggtacccaatcccccaccaagaatccggaat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttctccttgactactagagatggaactggtacccaatcccccaccaagaatccggaat 500
Query: 301 tttactctcagtgttattttatgatggcaatggtgacattggttaccctgtcatatgtat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttactctcagtgttattttatgatggcaatggtgacattggttaccctgtcatatgtac 560
Query: 361 gctacctgtgcatgcatggatacctcctaacacttcccaaacagttccaccaactaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctacctgtgcatgcatggatacctcctaacacttcccaaacagttccaccaactaagga 620
Query: 421 ccaagtatcagaatacatgagtcgatgacgaccattctctcccaacacttcc 472
||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 621 ccaagtatcagaatacatgagtccatggcgaccattctctcccaacacttcc 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
