GGNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGAGAGATTAAGTAGGAGCAGTTAACTTTTAATCAGTTT
CAGCCTTTCAGCCAGTCCGCTCCATGGCTCTGGGCCTGAGGTAAGAGACA
GAGGGCTGGTGGATGCAGGATGGTAAGATGGGAGAGGCTGCTCACACTAT
GACGGCTGGAGGCTGAAAGATTAAGACAGGGAAGAGCTGGGGACAAGATA
GATCTTCAAAAGGCCCATTCCCAGGGGCCTATCTCTCCTGTCAGATCCTG
CTTGTCATGGTTCCCTTGACCCCTCCCCCATCGGCCTGTTCAATTGTGGA
GCTGTCAATGGATACAGCCATTGATTGAGCCATCGACTCTCAAGATCCAG
TCACTTCTCAGGGAGGGAGTAGATCCACCAGCCAGGGACAAAGCCTTTAG
CACGGGAGCCTTACAGGTGACATTTCAAATCAAGATGACAGTAAGCAATA
GTCTGTCTGCTGGGTGCCAGTTGTCAAAATGCCCTCTGTGGGGTCAAAGT
CTCCCTACTGGAGAGTGACTGTAGAGACAGGGCGTTGGAACGCACAGGCG
GCTGCAGATGATACCCAAAGCCTTTCCGAGTCTCTCCCGTGGCCTGACTG
CTCAGTACTTGATTCTGAAGACTCCGATTATATTTCCATTGCCTCACCTG
ATGGGCCGGTACATCTCCCCTCTGGATTTTCCCCCCCCTCCTCCTTTGCT
TTCC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTACGAGGCTTAAATACT
TAGATACGCTCTGCAGCCTCGCTGTCTCGTCCCAACCCACCCTGGTCTCG
AACTTGCAGTGTAGCTGCAGGTGATAAGAGGCGATCCTTGCTTCGGCTCT
GAGATTACAGGCTCTCACTACCACACGTGGTTTATATGTACTGGGGATTG
AATCCATAGCTTTGCATGTGGGAGACCAATACTCTACCAACCGAGTTACA
CCCCAAGTTAATCAATGTTCCACTTTTGTCTTAAAGATTTGCTTATTTGT
CTGTCATTGGTTTGGAAGTGTGCCAGCCCACAGGTTGTGGAGGTCAGGGG
ACACAGCACAGGAGTTAGTTCTCATCTTCTAATATGTGGGCCCATGGAGG
AACTCATCTCATCAACATTGTCGGCAAGGACCTGCTGAGACATCTTCCCT
ATCCCGGTTCACTTTTAAAAAACAAACATCTAAACTTAAGGGGCTGGAGA
GATGGCTCGCAGCTAAGAGCACTTGCTGGTTGCTCTTTCCGAGGAACACT
TTTTTGATCCCAGCCCCTACTTGGGGGCTTACAACTCTTTGTATCCCCCC
TTTTCGGGTGTATATGAACCACCTCTTCCTTGGTCCTTCTTGGGCGTCAA
TGTCCCTTTCTAGAGTGCTCTTAACACTTCGGGGGTCCGAAAAAACCCAC
CCTTTTTCCTTTCATCCTTCCGCT

Query= MSMg01no353_e03.b1 MSMg01no353_e03.b1 CHROMAT_FILE:
MSMg01no353_e03.b1 PHD_FILE: MSMg01no353_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:04 2005
         (555 letters)



>mm_chr5_118954508_118955462
          Length = 955

 Score = 1029 bits (532), Expect = 0.0
 Identities = 547/552 (99%), Gaps = 2/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgagagattaagtaggagcagttaacttttaatcagtttcagcctttcagcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcctgagagattaagtaggagcagttaacttttaatcagtttcagcctttcagcca 696

                                                                       
Query: 65  gtccgctccatggctctgggcctgaggtaagagacagagggctggtggatgcaggatggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtccgctccatggctctgggcctgaggtaagagacagagggctggtggatgcaggatggt 636

                                                                       
Query: 125 aagatgggagaggctgctcacactatgacggctggaggctgaaagattaagacagggaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aagatgggagaggctgctcacactatgacggctggaggctgaaagattaagacagggaag 576

                                                                       
Query: 185 agctggggacaagatagatcttcaaaaggcccattcccaggggcctatctctcctgtcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agctggggacaagatagatcttcaaaaggcccattcccaggggcctatctctcctgtcag 516

                                                                       
Query: 245 atcctgcttgtca-tggttcccttgacccctcccccatcggcctgttcaattgtggagct 303
           ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atcctgcctgtcact-gttcccttgacccctcccccatcggcctgttcaattgtggagct 457

                                                                       
Query: 304 gtcaatggatacagccattgattgagccatcgactctcaagatccagtcacttctcaggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtcaatggatacagccattgattgagccatcgactctcaagatccagtcacttctcaggg 397

                                                                       
Query: 364 agggagtagatccaccagccagggacaaagcctttagcacgggagccttacaggtgacat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agggagtagatccaccagccagggacaaagcctttagcacgggagccttacaggtgacat 337

                                                                       
Query: 424 ttcaaatcaagatgacagtaagcaatagtctgtctgctgggtgccagttgtcaaaatgcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttcaaatcaagatgacagtaagcaatagtctgtctgctgggtgccagttgtcaaaatgcc 277

                                                                       
Query: 484 ctctgtggggtcaaagtctccctactggagagtgactgtagagacagggcgttggaacgc 543
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 276 ctctgtggggtcaaagtctccctactggagagtgactgtagagacggggtgttggaacgc 217

                       
Query: 544 acaggcggctgc 555
           ||||||||||||
Sbjct: 216 acaggcggctgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)