BAC Information

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BAC

Clone NameMSMg01-353E09
Chromosome5 (Build37)
Map Location 68,801,183 - 69,014,265
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E09.T7 (MSMg01no353_e09.b1)MSMg01-353E09.TJ (MSMg01no353_e09.g1)
ACCAG464191AG464192
length781795
length of high quality
(start - end)		469 (73 - 541)368 (78 - 445)
definitionCHROMAT_FILE: MSMg01no353_e09.b1 PHD_FILE: MSMg01no353_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:06 2005CHROMAT_FILE: MSMg01no353_e09.g1 PHD_FILE: MSMg01no353_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,013,797 - 69,014,265)(68,801,183 - 68,801,550)
sequence
NTTTCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTCAAGTTTCATAATTTGCTCCATATGTGAGCTATCAAAT
GAAAATTTTATTGTGTAATTTTGTTCTCATTTCTCATATTCTCACAAACT
CAATTGTTAAAAGGAATAACTTTAGACACTATATTTTTGAAATAATTTTT
TCATAAACCTTTTATAGCCCCTTTATTGGATACAAGACAATCAGAACTCT
AAACTTGTTCTCTTATACTTGTGGTCAAGCTAGTTAAGATGGAGGTGGAA
TGAGTCAGTGATCCTTCCCCTTGGCTTCTAATTCATTTTTCCAATGCTTG
AACACCTTTGACATCCTTGAAGCCTTCTTGTGACATTAAGGGCATACTGT
ATAACTGTTAGTAGAGAATTCAAGAGTAAGGATCAAATTAAAAATGTTTC
TGAAGAAAATATAATAATTTATTGCTTGTTTGGTCTAATGCTTGTATTAT
GTTGATTTTTCCCAAAATTGTATGAGAATCCTCATATCCACACAAAAGAT
GCTGAGGGACCTTGCCCCCAGTTGGCTTTGATTGCGAAAAAAAATTTGTT
TGCAGCCCATGCCCTATTTTGGCAGACCGAGGTCAGGATTTTTACGATTT
TTGTGCCTGGGGATCTACAAAGATTCGCATTACAAATGGCTGCTTCCTTT
TATAAAGCAACAAAAAACTTGTTGCCTTTACCTTTGCCTTTCTTCTCCCA
CTTATACACCTATTCTTTTCCGCTTTTTCTG

NNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGATTCTTGAGAGGGTATAA
ATGTGAGAGTCTCAAGAGGGCCTGTGGTGGCTTCTGGTCCCCCTGGTGCT
GGTGCTGCTTTTGCTATTCCTGGAATGCAGAATGGCTGGAATATTGTTTT
GATGATTTTGCTGGATTGCTGATTGGAAATTTACTGACAACAGAAATTGG
ACTTACCTTAAAGAACTTCATGCCCTGAATCATCAGGAAGTAGTCTATAG
AGGTCTATGCTCCCTTTTCTTTTCATCCTTCTTTCTCTCCTACCTAGTGT
CAGAGAGTTGGAAAGGATGGGGGTAAAATAAGGGGTGCAAGAGTGGTAAA
TAATACAATCCAATAAAGCACAGCCAAAATTGTATGTTTATAAGTAACAG
TATGTGGGATATGCAGATATGATCAGAAATTATACCTGATCCAAACTTTG
ATGGACAATGTTCCATGACTTTGCTTGCCCTCTTCCCTCCAATCTCCATT
TGCTCATTCCTCATGCTTCTACATATTTGCTCATCCTATTGCCTTTTTTC
GCTTTTACCTCTTCCTTTCCTCTTATCTCCCTTTTTTTCTTTCCTCCTTT
CATCCCTTTTTCCCCCCCTTCTTTTTTTTTCTCCCCTTCCATCCCCCCCT
TTTTTCTCCTTTCCTTTTTTATTCCTTTCCTCACTCCTCTTTCCCCCTCC
CCCCCCTCCTATCTTCACCCCCTTTTTCCTCCCCTATCTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e09.b1 MSMg01no353_e09.b1 CHROMAT_FILE:
MSMg01no353_e09.b1 PHD_FILE: MSMg01no353_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:06 2005
         (469 letters)



>mm_chr5_69013664_69014532
          Length = 869

 Score =  861 bits (445), Expect = 0.0
 Identities = 463/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgctccatatgtgagctatcaaatgaaaattttattgtgtaattttgttctcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatttgctccatatgtgagctatcaaatgaaaattttattgtgtaattttgttctcattt 543

                                                                       
Query: 61  ctcatattctcacaaactcaattgttaaaaggaataactttagacactatatttttgaaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctcatattcttacaaactcaattgttaaaaggaataactttagacactatatttttgaaa 483

                                                                       
Query: 121 taattttttcataaaccttttatagcccctttattggatacaagacaatcagaactctaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 482 taattttttcataaaccttttatagcccctttattggatacaagacaatcagaactctga 423

                                                                       
Query: 181 acttgttctcttatacttgtggtcaagctagttaagatggaggtggaatgagtcagtgat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acttgttcccttatacttgtggtcaagctagttaagatggaggtggaatgagtcagtgat 363

                                                                       
Query: 241 ccttccccttggcttctaattcatttttccaatgcttgaacacctttgacatccttgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccttccccttggcttctaattcatttttccaatgcttgaacacctttgacatccttgaag 303

                                                                       
Query: 301 ccttcttgtgacattaagggcatactgtataactgttagtagagaattcaagagtaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccttcttgtgacattaagggcatactgtataactgttagtagagaattcaagagtaagga 243

                                                                       
Query: 361 tcaaattaaaaatgtttctgaagaaaatataataatttattgcttgtttggtctaatgct 420
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 242 tcaaattaaaaatgtttctgaagaaaatataataacttattgtttgtttggtctaatgct 183

                                                            
Query: 421 tgtattatgttgatttttcccaaaattgtatgagaatcctcatatccac 469
           ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtattatgttaatttttcccaaaattgtatgagaatcctcatatccac 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_e09.g1 MSMg01no353_e09.g1 CHROMAT_FILE:
MSMg01no353_e09.g1 PHD_FILE: MSMg01no353_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:06 2005
         (368 letters)



>mm_chr5_68800983_68801750
          Length = 768

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggattcttgagagggtataaatgtgagagtctcaagagggcctgtggtggcttctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggattcttgagagggtataaatgtgagagtctcaagagggcctgtggtggcttctgg 260

                                                                       
Query: 61  tccccctggtgctggtgctgcttttgctattcctggaatgcagaatggctggaatattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tccccctggtgctggtgctgcttttgctattcctggaatgcagaatggctggaatgttgt 320

                                                                       
Query: 121 tttgatgattttgctggattgctgattggaaatttactgacaacagaaattggacttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgatgattttgctggattgctgattggaaatttactgacaacagaaattggacttacc 380

                                                                       
Query: 181 ttaaagaacttcatgccctgaatcatcaggaagtagtctatagaggtctatgctcccttt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttaaagaacttcatgccctgaatcatcaggaggtagtctatagaggtctatgctcccttt 440

                                                                       
Query: 241 tcttttcatccttctttctctcctacctagtgtcagagagttggaaaggatgggggtaaa 300
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 441 tcttttcatccttctttctctcctacctagtgtcagagagttagaaaagatgggggtaaa 500

                                                                       
Query: 301 ataaggggtgcaagagtggtaaataatacaatccaataaagcacagccaaaattgtatgt 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 ataaggggtgcaagagtggtaaataatacaatccaataaagtagagccaaaattgtatgt 560

                   
Query: 361 ttataagt 368
           ||||||||
Sbjct: 561 ttataagt 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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