NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACTGCTCTATAAATATCCCTTACATCATCCACTCCTTTT
TCTGTATCTTTGTTCCTATCTCTATTTTCTGTTCTTTACTCTCTCTTTCT
TACACTCTGCCATTGAACTTACCTTTTCTTTACATCTTTCTATAATCAAA
GAAGTTCGAGTTTATGAGCTCAAGTTCTGACCTCCACCTCGACTTTAAAT
TTCTTACATTGAGAAAAATGATAGCATATATATCCACTTAACCCAGTTCC
AAAAATGACACCTGCAGTTAGATGTAAAGAAGTACAACACTTGAACCAAA
GTTGTAACAATGAAAAGTGCCAAGTAACTGGTAACTACTATGATTTATTA
ATTTGGATTAATAGAAAAATGCAGTGGTCACTATTCTCATATATATTCTT
TTCATTATAAGCTCTCTAGCCCATCTTTCTCTTTCAGGCCTTGCCTGTTT
AAATGCCATTGAGAATAACAGATGACAAATTTCTCTTTGTATTCTATCTC
AATGTGTTTTGACCTTTTAGAGTAAACCCAGAATCTTGGAATTAAGTTCT
AGATTTATTAGAATTATTTTTATTTGTCATGACTCAGTAGATTCAATCTA
GAAGGTCACCCACATGAATTTTCATTGGAACATCTCTTGATTTGACTGCC
ATACATCCATTCGTCATGGAAAAACTTGTTAGACATTAATCTTCTGGTCA
TA

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATCACTTCATTTCAAGAG
ATATTTATTTTTTAAATTTACATATCTGTCCTTTTTATTGGTTTATTTAT
TTACTCAAATGTTGTCCCCCTTCCTGGTTTCCCCTCCACAAATCCCCTAT
CCCATCCCCCCCCACCTTCTATGAGGGTGCTACCCCATCTACCTACCCAC
TCCTGCTTCAATGCCCTAGCATTCCCCTATGCTGGGGCATTTAGCCTCCA
CAGGACTAAGGACCTACTCTCCCAATGATGCTCAACAAGGCCATCCTCTG
AAATATATGCAGCTGGAGCCATGGGTCCCTCCGTGTGTACCCTTTGGTTG
GTGGTTTAGTCCCTGGGTGTCAGGTTGGTTGATATTGTTGTTCTTCCTAT
TAGGTTGCAAACCCTGCAGCTCCTTCAGTCCTTCCCCTAACTCTTTCATT
GGGATCCCCATGATCAGTCCAATGGGTGGCCGTGAGCATCCACATCTGTA
TTAGTCACGTTCTGGCAGAGACTCTCTAAGGAAAGCTATACCAGGCTCCT
GTCAGGAAACACTTCTTGGGGTTAGCAATAGTGGCTGGGGGTTAGTATCC
TGGAAATAGGATGTGTCCTTTAATAGTGCTATGCCTTCGGATGGTCCCTT
TCTTTTCATTTTCGTTCCCCTTTTTTGCCCTTTGTTTTTTTTCATGATGG
GGGCTTTTTCGG

Query= MSMg01no353_f04.b1 MSMg01no353_f04.b1 CHROMAT_FILE:
MSMg01no353_f04.b1 PHD_FILE: MSMg01no353_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:10 2005
         (554 letters)



>mm_chr5_9654423_9655376
          Length = 954

 Score = 1058 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaactgctctataaatatcccttacatcatccactcctttttctgtatctttgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactgctctataaatatcccttacatcatccactcctttttctgtatctttgt 263

                                                                       
Query: 64  tcctatctctattttctgttctttactctctctttcttacactctgccattgaacttacc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 tcctatctctattttctgttctttactctctctttcttacactctgccattgaacttatc 323

                                                                       
Query: 124 ttttctttacatctttctataatcaaagaagttcgagtttatgagctcaagttctgacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttctttacatctttctataatcaaagaagttcgagtttatgagctcaagttctgacct 383

                                                                       
Query: 184 ccacctcgactttaaatttcttacattgagaaaaatgatagcatatatatccacttaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccacctcgactttaaatttcttacattgagaaaaatgatagcatatatatccacttaacc 443

                                                                       
Query: 244 cagttccaaaaatgacacctgcagttagatgtaaagaagtacaacacttgaaccaaagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagttccaaaaatgacacctgcagttagatgtaaagaagtacaacacttgaaccaaagtt 503

                                                                       
Query: 304 gtaacaatgaaaagtgccaagtaactggtaactactatgatttattaatttggattaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaacaatgaaaagtgccaagtaactggtaactactatgatttattaatttggattaata 563

                                                                       
Query: 364 gaaaaatgcagtggtcactattctcatatatattcttttcattataagctctctagccca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaaaatgcagtggtcactattctcatatatattcttttcattataagctctctagccca 623

                                                                       
Query: 424 tctttctctttcaggccttgcctgtttaaatgccattgagaataacagatgacaaatttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctttctctttcaggccttgcctgtttaaatgccattgagaataacagatgacaaatttc 683

                                                                       
Query: 484 tctttgtattctatctcaatgtgttttgaccttttagagtaaacccagaatcttggaatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctttgtattctatctcaatgtgttttgaccttttagagtaaacccagaatcttggaatt 743

                      
Query: 544 aagttctagat 554
           |||||||||||
Sbjct: 744 aagttctagat 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)