Query= MSMg01no353_k06.b1 MSMg01no353_k06.b1 CHROMAT_FILE:
MSMg01no353_k06.b1 PHD_FILE: MSMg01no353_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:34 2005
(384 letters)
>mm_chr5_144866997_144867780
Length = 784
Score = 708 bits (366), Expect = 0.0
Identities = 378/386 (97%), Gaps = 8/386 (2%)
Strand = Plus / Plus
Query: 1 ggtcacatagtgaggccctgtttcaaaaaaagaaagggctaggtagggttagggatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcacatagtgaggccctgtttcaaaaaaagaaagggctaggtagggttagggatgtgg 260
Query: 61 ctttgtggtatttgcataagtatgggagaccctaggttcaaatttcagtactgtaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgtggtatttgcataagtatgggagaccctaggttcaaatttcagtactgtaaagac 320
Query: 121 aaagaaatcttggagtcgggcagtggaggcagaggcaggtggatttctgaatttgaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaaatcttggagtcgggcagtggaggcagaggcaggtggatttctgaatttgaggcc 380
Query: 181 agccgggtatacagagtgagttccaggacagccaagactacacagagaaaccctgtctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccgggtatacagagtgagttccaggacagccaagactacacagagaaaccctgtctca 440
Query: 241 aaaaacaaaaaatttatacaaa--caaacaaacaaacaaacgaaagaaagaactcttggg 298
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaacaaaaaa------caaaaacaaacaaacaaacaaacgaaagaaagaactcttggg 494
Query: 299 ccagttatctgccctttcttggctcctcagaactcagcaaacagaaacagaaaagtgggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccagttatctgccctttcttggctcctcagaactcagcaaacagaaacagaaaagtgggg 554
Query: 359 tctagagagatggctcagctatttag 384
||||||||||||||||||||||||||
Sbjct: 555 tctagagagatggctcagctatttag 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_k06.g1 MSMg01no353_k06.g1 CHROMAT_FILE:
MSMg01no353_k06.g1 PHD_FILE: MSMg01no353_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:34 2005
(242 letters)
>mm_chr5_145049245_145049886
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 240/242 (99%)
Strand = Plus / Minus
Query: 1 cacagaccgtggtggccaagactaaccaggtcagggttccccatcctacctctgtgaatg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 cacagaccgtggtggccaagactaaccaggtcagggttccccatcctgcctctgtgaatg 383
Query: 61 gcccatttcattgatctgtctgaggtggcagaaaccgcacaggagtatggacagcgggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcccatttcattgatctgtctgaggtggcagaaaccgcacaggagtatggacagcgggaa 323
Query: 121 cccgtgggaagtgagctgggctggcaaggccgagtcctgagtagagctgtgctcggctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccgtgggaagtgagctgggctggcaaggccgagtcctgagtagagctgtgctcggctct 263
Query: 181 cagcgccgtgctctgaggtctgcactggagtgaggctgcggaaacccagttcaagaaggg 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagggccgtgctctgaggtctgcactggagtgaggctgcggaaacccagttcaagaaggg 203
Query: 241 tc 242
||
Sbjct: 202 tc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
