Query= MSMg01no353_n04.b1 MSMg01no353_n04.b1 CHROMAT_FILE:
MSMg01no353_n04.b1 PHD_FILE: MSMg01no353_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:48 2005
(534 letters)
>mm_chr5_138312294_138313228
Length = 935
Score = 248 bits (128), Expect = 9e-70
Identities = 439/568 (77%), Gaps = 72/568 (12%)
Strand = Plus / Plus
Query: 12 ctgggaaggacagggagaatctgaagtcactgtgggggacagtgacagagg--acagttg 69
|||||||||| |||||| ||||||| ||||| |||||||||||| ||| ||| |
Sbjct: 187 ctgggaaggatggggagactctgaagccactgcaggggacagtgac--aggaaaca--ta 242
Query: 70 gaaaggactacacagagcatcctga---ttctt-catcaatatgcaggggtgggatacaa 125
|||||||| ||||||| ||| |||| ||||| || | | ||||||||| || ||||
Sbjct: 243 gaaaggacaacacagaacattctgagacttcttgca-c---aggcaggggtgagacacaa 298
Query: 126 ggcaggactgtccctatga--ctggtgagacaggaaag-caagggaaaggttgggctggg 182
|||||||||||||| | | || ||| |||||||||| | || ||| ||||||| ||||
Sbjct: 299 ggcaggactgtcccca--aagctagtgggacaggaaagac-agtgaagggttgggttggg 355
Query: 183 ctccctctg--a-ggga--tgagct-------cagaga-tgcttggcaggctcctctagc 229
||||||||| | | | ||| || |||||| | | |||| ||||||||||||
Sbjct: 356 ctccctctgcaatgtcaactga-ctcttggggcagagagt-cctggctggctcctctagc 413
Query: 230 agactcctgtcc-----act---ta--------aaacccactgtcccctcct-atgttta 272
|||| ||||||| ||| || | |||| ||||||||||| | | |||
Sbjct: 414 agacacctgtccacatgactccctactcttcccagccccattgtcccctcctga-ggtta 472
Query: 273 attctttgctagtgagaaagat-gcaaaca-t-----gcatgcaaacaagcggctgacag 325
| || |||||||||| | | || | || | ||||||| ||| || | ||| ||
Sbjct: 473 agtccctgctagtgag---g-tcgctaccactcaccagcatgcagacaggctgatgagag 528
Query: 326 caaaagaagcaggatccaagccatagccagagaccctccaggaagcaagatcagcagagc 385
| |||||||||||| |||||| || ||| | ||||||||||| ||||||||| |||
Sbjct: 529 c---agaagcaggatctgagccatggctggagtctctccaggaagcgagatcagcaaagc 585
Query: 386 catcaggaaggcaaggatgccctgtatagggaca-taggggtgctcaggagtccagagag 444
|||||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||
Sbjct: 586 catcaggaaggcaaggatgctctgtctagggacact-ggggtgctcaggagtccagagag 644
Query: 445 aaccaggg-aaatgtgagacagatccccag-ccttcacatgtggagggctgagtcagggc 502
|||||||| ||| | ||||||||||||||| ||||| |||||||||| |||||| ||||
Sbjct: 645 aaccagggtaaa-gcgagacagatccccaggccttctcatgtggaggactgagttggggc 703
Query: 503 cggtcctctccatctccacctccttgtg 530
|| ||| ||||||||||||||||||||
Sbjct: 704 aggacctttccatctccacctccttgtg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_n04.g1 MSMg01no353_n04.g1 CHROMAT_FILE:
MSMg01no353_n04.g1 PHD_FILE: MSMg01no353_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:48 2005
(376 letters)
>mm_chr5_138154131_138154906
Length = 776
Score = 688 bits (356), Expect = 0.0
Identities = 370/376 (98%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 1 aatcctattttttttttttgttctgtttcacatttttattgagaggggatgtggaaggga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatcctattttttttt---gttctgtttcacatttttattgagaggggatgtggaaggga 260
Query: 61 ggaagtgacagacagatggacagacagaaacggaaatgggcatgtatagaggtcagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagtgacagacagatggacagacagaaacggaaatgggcatgtatagaggtcagaata 320
Query: 121 caacatatgggagtcagtgctcttgtagcaactgtgtgtgtatcctgggaatcgcactca 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 caacctatgggagtcagtgctcttgtagcaactgtgtgtgtatcctgggaattgcactca 380
Query: 181 ggttgttagcattggcagcaagctactacgtactgagccatcttgatggcccccattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgttagcattggcagcaagctactacgtactgagccatcttgatggcccccattttc 440
Query: 241 tgtttttaaaacctctcagaatacacgtaaaacactgaaatatcaagaagcagataaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttttaaaacctctcagaatacacgtaaaacactgaaatatcaagaagcagataaact 500
Query: 301 tacaaacggagaggagcccgccagaaaacacagctgaaggacttggccaacagtcatctc 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaacggagaggagcccgccagaaaacacagctgaaggacttggccaacagtcatctc 560
Query: 361 agagaagcaggttaga 376
||||||||||||||||
Sbjct: 561 agagaagcaggttaga 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
