Query= MSMg01no354_d16.b1 MSMg01no354_d16.b1 CHROMAT_FILE:
MSMg01no354_d16.b1 PHD_FILE: MSMg01no354_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
(608 letters)
>mm_chr5_22334861_22335868
Length = 1008
Score = 1108 bits (573), Expect = 0.0
Identities = 597/605 (98%)
Strand = Plus / Minus
Query: 4 ggaattctaattatgacagtctttcttacatgtgactgcgtgatttgtttgcaccagacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ggaattctaattatgacagtctttcttacatgtgactgcgtgatttgtttgcaccagacc 749
Query: 64 cctgattctccaaaagtcacagcaaaggccaaagcttcagtctcaaagggagaagaatgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cctgattctccaaaagtcacagcaaaggccaaagcttcagtctcaaagggagaagaatgc 689
Query: 124 tttggtgtgacacagttctctgtcactgaaatagtagaatttacagcgtgccattttgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tttggtgtgacacagttctctgtcactgaaatagtagaatttacagcgtgccattttgaa 629
Query: 184 gaggtgaatggattaatattaaatgttccatctttactgaaacacaatgtttactgggaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 628 gaggtgaatggattaatattaaatgttccatctttactgaaacacaatgtttattgggaa 569
Query: 244 gcatgtcttctctaggatttgagagacctccattttaagtcacattttctgctgaaaaga 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcgtgtcttctctaggatttgagagacctccattttaagtcacattttctgctgaaaaga 509
Query: 304 aataaatctggccaggtggtcaaatggaaagtagaaatatggtgtctgcaagaagttatc 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aataaatctggctaggtggtcaaatggaaagtagaaatatggtgtctgcaagaagttatc 449
Query: 364 aacaaaaactctcaggtaatactatatataggaagccttgttggatgttttatagtctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 tacaaaaactctcaggtaatactatatataggaagccttgttggatgttttatagtatta 389
Query: 424 caggaatatataaggtccatgaaaaatgattctagatgctaaaaacagcaagagacaata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caggaatatataaggtccatgaaaaatgattctagatgctaaaaacagcaagagacaata 329
Query: 484 tttttgcatataagtgtgagagtttacagttcacagtagagattcctcacctcatagaca 543
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 328 tttttgcatgtaagtgtgagagtttacagttcacagtagagattcctcacctcatagata 269
Query: 544 ggaaatgaaaccgaggaaggataataccagtatgtctctcagaggctcattcccagtcac 603
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaaatgaaaccgaggaaggacaataccagtatgtctctcagaggctcattcccagtcac 209
Query: 604 ccgaa 608
|||||
Sbjct: 208 ccgaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_d16.g1 MSMg01no354_d16.g1 CHROMAT_FILE:
MSMg01no354_d16.g1 PHD_FILE: MSMg01no354_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
(498 letters)
>mm_chr5_22164618_22165518
Length = 901
Score = 915 bits (473), Expect = 0.0
Identities = 493/501 (98%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 1 cattttctatttaagccacaagagcaacagggagaagcagaatgtaattatccaaattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattttctatttaagccacaagagcaacagggagaagcagaatgtaattatccaaattag 260
Query: 61 aagttttctctgacactgaggtcaccatctctgctatttgtggaagtgccaagggatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttttctctgacactgaggtcaccatctctgctatttgtggaagtgccaagggatatt 320
Query: 121 tattgatcacatgcagccaagtatactgctttatgtctctgctgatggacaaccccctta 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tattgatcacatgcagccaagtatactgctttatgtctctgttgatggacaaccccctta 380
Query: 181 ggcacacagcctctaaatactacagcagtgaaaaat---gacatggccaaaaatgttctt 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggcacacagcctctaaatactacagcagtgaaaaattatgacatggccaaaaatgttctt 440
Query: 238 cagcatttcagaaaggcagccccacatcttgtgttcctgtctctggcttgaaagaggact 297
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 441 cagcatttcagaaaggcagccccacatcttgtgttcctgcctctgacttgaaagaggact 500
Query: 298 cggtcaaaccactagactagctaccaagtaatggaaggaggaaagtgtgaggggtagtgt 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggtgaaaccactagactagctaccaagtaatggaaggaggaaagtgtgaggggtagtgt 560
Query: 358 tcatagcatagggtagcagtggttttacagttatttaatttgatcttgaatctgaatgtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatagcatagggtagcagtggttttacagttatttaatttgatcttgaatctgaatgtt 620
Query: 418 tgggaaacattctggccattcattcacttcatgctcaagactacccaagactaagggata 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tgggaaacattctggccattcattcacttcatgctcaagactacccaagactaatggata 680
Query: 478 ctgaaagagggcagaatttct 498
|||||||||||||||||||||
Sbjct: 681 ctgaaagagggcagaatttct 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 901
Length adjustment: 10
Effective length of query: 488
Effective length of database: 891
Effective search space: 434808
Effective search space used: 434808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
