BAC Information

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BAC

Clone NameMSMg01-354P23
Chromosome5 (Build37)
Map Location 63,130,993 - 63,131,428
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream gene3110047P20Rik, LOC100042133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354P23.T7 (MSMg01no354_p23.b1)MSMg01-354P23.TJ (MSMg01no354_p23.g1)
ACCAG465491AG465492
length841789
length of high quality
(start - end)		---436 (77 - 512)
definitionCHROMAT_FILE: MSMg01no354_p23.b1 PHD_FILE: MSMg01no354_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:19 2005CHROMAT_FILE: MSMg01no354_p23.g1 PHD_FILE: MSMg01no354_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAAATTTGCGCCCCTAAACGACTCCTATATCCAGAAAACCGCGGAA
TTCCAGGAAATACCAAAATTATTCAACTTGCCATTTTATAAGAGCTACAG
AAATTGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGNNNCCCCCTNNNTCCCCCCTCCCCTCTCCCCCCCCCCCCCCCT
TCCCTCCCCCCCCTCCCCTCCTCCCCCCCCCCCCCCCCCCCCCTCCTCCC
CCCCATCTCCTCTTCCCCCCTCCCCCTCCTCCCTTTTCTCCCCCCCCCTC
TTCCCCCCTCCCCCCCCCCCCCTCTCCCCCCCCCCCTCCCACTCCTCCCC
CTCCCCCCCCTCCCCCCCCCCCCATCTTTTGNCGCTCCCCCTCTATCCCC
CCTTTCCCCCCACAAACACCCCCCCCACCTCCACCCAACCAACACCCCCC
TTTCTAAACACGCCCCCAAAAAAANAAACNNCACAACCCCAACCAACAAT
ACACACAAACACCANCAAAAAAACCCAAACTACCCCCAACCCCCACCCAC
CATAAAATCCCACCGCCCAAAACACCCCACCAAACACACACCAAACCCTA
CCCCACCACCCCCTAAACAAAGCACCAACCCACAACAAAGACAACANACT
CACACAANNACCCNNNNCAAACACAAAAAAAANNAACAAACAAACAAAAA
NAAACAACGTCGNNNNNCAAACACCNNACCCACAAAATCCCCCACCCACA
CACACAAANNCNACCCCTGAAGCCACACACNCAAACGNACTTAAAACNNC
CTAAAAAACCCACTTAATNCCCCCCCATTCACAACACCCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACTTACGCAGTCAGCTGACCA
CTGGGGATAACTCCCAAAGTGCTATTCTTCTGAACAAGGAAAGCAAAATG
CATTTGTTATACTGATCTCTTAAATCCTAGCCTCTAGATGGAAAACATCT
AGTCGAGAGACTCAAAGAATAAAGCCAAAGTTTACTTAGCCAAGTAGGCA
AGCACTCCAGAGGGCTACTGAGGCTTTCCCAGAGACGGGCAGTGAGCCAA
GGAGCTTCTGTGTTGGGGATTTTCATCTTGTTATGGACAGTTTTGAAGTG
AGTGGTGTATTGGTGGGATAAGCTGACCGTTTGCTTTTCCTCCGAAATCA
TGGTACACCTGATTTTCCTTGTGTGGTGCTTCACCCTATAATCCCCTAGA
AAAGCCTAATAAGGTGGTGCGGATGGTGGTGGTGATGTTGCATTGAAGGC
TGGGGCTGAAGATGCAGAAGCCACATGAGCACATATGCCCAGGCAAATGG
CCTGGTGCTTTAGTGTCTGATACTTTGGGAGCAACCTGCTGTCAGCTTCN
AGGACAATTATCCACAAAGGGCTGTTCCTGACCCCCCAGGAGAGGAGACA
GCTGCCCGGAAAGGAGCCCCCACTTTTTTGAATAACTCCTGGTTCCTCCT
TTTCTGAAAACGCTGAAGGCCCCAGGTTGAACTTTTGAAAAGTTGGGTTC
AACAATCTTTGTGATCCAAGGGGGTTTGGTATTTGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_p23.g1 MSMg01no354_p23.g1 CHROMAT_FILE:
MSMg01no354_p23.g1 PHD_FILE: MSMg01no354_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:19 2005
         (436 letters)



>mm_chr5_63130793_63131628
          Length = 836

 Score =  781 bits (404), Expect = 0.0
 Identities = 428/436 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacttacgcagtcagctgaccactggggataactcccaaagtgctattcttctgaaca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attacttatgcagtcagctgaccactggggataactcccaaagtgctattcttctgaaca 577

                                                                       
Query: 61  aggaaagcaaaatgcatttgttatactgatctcttaaatcctagcctctagatggaaaac 120
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 576 aggaaagcaaaatgcatttgttatactgatctcttagctcctagcctctagatggaaaac 517

                                                                       
Query: 121 atctagtcgagagactcaaagaataaagccaaagtttacttagccaagtaggcaagcact 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 516 atctagtcgagagactcaaagagtaaagccaaagtttacttagccaagtaggcaagcact 457

                                                                       
Query: 181 ccagagggctactgaggctttcccagagacgggcagtgagccaaggagcttctgtgttgg 240
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccagaaggctaccgaggctttcccagagacgggcagtgagccaaggagcttctgtgttgg 397

                                                                       
Query: 241 ggattttcatcttgttatggacagttttgaagtgagtggtgtattggtgggataagctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggattttcatcttgttatggacagttttgaagtgagtggtgtattggtgggataagctga 337

                                                                       
Query: 301 ccgtttgcttttcctccgaaatcatggtacacctgattttccttgtgtggtgcttcaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccgtttgcttttcctccgaaatcatggtacacctgattttccttgtgtggtgcttcaccc 277

                                                                       
Query: 361 tataatcccctagaaaagcctaataaggtggtgcggatggtggtggtgatgttgcattga 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tataatcccctagaaaagcccaataaggtggtgcggatggtggtggtgatgttgcattga 217

                           
Query: 421 aggctggggctgaaga 436
           |||||||| |||||||
Sbjct: 216 aggctgggactgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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