TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATGTTTAACTAGGGAGGATGCTCAGAAATCCAGACCTTCTGAGC
CATATATCCTTGGGCCCATTTCAGAAGTGCACTGTTTTCAAACGCTAATC
AAGCCTGTGTTATTAGCCAGGCTGAGGTGTTTCATGTCACTGAGAAGCGA
GAGTCAATGGCCAAGTCGCTACTAAGTTCCCTGGGGCAGCAGAGCCCTGT
ATCAACACAGGCTGGACCCTGCAACTCATCTCCCAGGCAGCGAGGCTGTT
TCCAGGAGGGCTTCACAGCAGGGCATGGCACCTCACAATTACTCATAACT
AAAAGCCTCAAAGGCTCTCTGCTCATTACACCCACATATGGACTGAGACT
GGAGTCTGTTAGCCTGAAAGAAAGAAAACCAGACTTTGGACAGTTACCAT
CCAGGGGCATTAGAGTGTCACCAGAACACACAGTCAGTGACCAAAGATGC
AAATGGAATTTCAGAAGCCACAAGAAAAATTTAAGTTTTTGATGTGTCAA
AAATTTCCAGGTCACAAGTTTCTTTAAAGCTATTGCTGATTTCCCAGGAG
CTTTCCAAGGCTCCAGGTGTCTTGCAGATCTATCCTCTGCTCTCCTTCCT
ATCATACTTGAGGATCCACAGAGGGAGGTCCTGAAGACAAAGCCATCCTC
TAGACTTATATCTGAACCAACATTTTACCACGCACTCGGGGTCAAGGAAA
AATTCATAG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGCATAGGGCTCCCAATGGAGGAGCTAG
AGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA
CATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATAT
ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC
TTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGG
GGAGTGGGTGGGCAGGGGAGTGGGGGTGTNTNNTTTTTNTTTTTTTTNNT
TTTNTTTTNNTNNNNTTTTTGTTTTTTTTTTTTTNTNTTTTTTTTTTTTT
TTTTTGTTTTTTTTTTTTGNTTTTGGTTTTTTTGTTTGGTTTTTTGCTGT
TTGTTTTTTTTGTTTTTGTTTTTTTGGTGTTTTTGGTTTTGTTTTTGTTG
GTTTTTTTGTGGTGTTTTTGTTTCTTTTGTTTCCCTCTTCTGTTCCTGTC
TTTTTTGCTTTTCTTTTTGTTTTCTTTCCCCGCTTTTTCTTCCCCCTCCT
TTGCCTTTTCCTTTGCTCCTTCCTCTTTTTCTCGTTTCCTGTCTTCTTTT
TTGCGTTGTGTCTTCTTTTTGTTTTTTCTTTCTTTTTCCTTCTTCTTTGC
CTCTCTTCCTCCGTCCTTTCATCTTTTCTGTTCTTCCCTCCCGTTATTTT
GTCGTTATCTCTAN

Query= MSMg01no355_a14.b1 MSMg01no355_a14.b1 CHROMAT_FILE:
MSMg01no355_a14.b1 PHD_FILE: MSMg01no355_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:22 2005
         (554 letters)



>mm_chr5_27234743_27235696
          Length = 954

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatgtttaactagggaggatgctcagaaatccagaccttctgagccatatatc 64
           |||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 754 gaattcttatgggcaactagggaggatgctcagaaacccagaccttctgagccatatatc 695

                                                                       
Query: 65  cttgggcccatttcagaagtgcactgttttcaaacgctaatcaagcctgtgttattagcc 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cttggacccatttcagaagtgcactgttttcaaacgctaatcaagcctgtgttattagcc 635

                                                                       
Query: 125 aggctgaggtgtttcatgtcactgagaagcgagagtcaatggccaagtcgctactaagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggctgaggtgtttcatgtcactgagaagcgagagtcaatggccaagtcgctactaagtt 575

                                                                       
Query: 185 ccctggggcagcagagccctgtatcaacacaggctggaccctgcaactcatctcccaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccctggggcagcagagccctgtatcaacacaggctggaccctgcaactcatctcccaggc 515

                                                                       
Query: 245 agcgaggctgtttccaggagggcttcacagcagggcatggcacctcacaattactcataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agcgaggctgtttccaggagggcttcacagcagggcatggcacctcacaattactcataa 455

                                                                       
Query: 305 ctaaaagcctcaaaggctctctgctcattacacccacatatggactgagactggagtctg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 454 ctaaaagcctcaaaggctctctgctcattacacccacatatggactgagactggagtccg 395

                                                                       
Query: 365 ttagcctgaaagaaagaaaaccagactttggacagttaccatccaggggcattagagtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttagcctgaaagaaagaaaaccagactttggacagttaccatccaggggcattagagtgt 335

                                                                       
Query: 425 caccagaacacacagtcagtgaccaaagatgcaaatggaatttcagaagccacaagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caccagaacacacagtcagtgaccaaagatgcaaatggaatttcagaagccacaagaaaa 275

                                                                       
Query: 485 atttaagtttttgatgtgtcaaaaatttccaggtcacaagtttctttaaagctattgctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttaagtttttgatgtgtcaaaaatttccaggtcacaagtttctttaaagctattgctg 215

                     
Query: 545 atttcccagg 554
           ||||||||||
Sbjct: 214 atttcccagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)