BAC Information

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BAC

Clone NameMSMg01-355C09
Chromosome5 (Build37)
Map Location 103,881,761 - 103,882,161
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C09.T7 (MSMg01no355_c09.b1)MSMg01-355C09.TJ (MSMg01no355_c09.g1)
ACCAG465605AG465606
length763782
length of high quality
(start - end)		541 (43 - 583)377 (73 - 449)
definitionCHROMAT_FILE: MSMg01no355_c09.b1 PHD_FILE: MSMg01no355_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:31 2005CHROMAT_FILE: MSMg01no355_c09.g1 PHD_FILE: MSMg01no355_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTCTATCTTCTGGGCTCCTCCAGGGGACCTGGGTCATTCATGTCT
GCCCTCTGCAGTGCACACAGCCTGTCTTCTAAGCTCAGGCTAGCTCCATA
CCATCATGGCAGCTAGGTCATTCCCTGGTATTAGAATCTCGAAAATGCTG
GTGTCTTCATTTGTAACTGGGTTGAACTTCCACCAATAGCTTCTTCTGGG
CTCTCTTCATGGTTCCAAACTCAACTTCTCTGTATGACCCTTCAGTCCTG
GGGCTTCAACAGCTATTCTGGCTGCACCTTCACCAATGGCCTCTCCTGGC
CCCTCAGTGCCAAGCCTCAGCTGTTCCCTATGACCCTTCCATGCCTTCAA
AACCAGTACCACCTGGGTGACTCTTACACTGCCAAGTTTAGCTGCCAGCA
GGAGATACAACTTTGGACCACAGCTTCTGTGGGCTGACTCTGAGGAAACT
CTTCCTAGAAGACTTTACCTCAGTGATACTGGTCTCTTCTTAATCACAGC
TGATCAGAACCCCCGATTCTTCACACCGAAGGCTCAGAAGAGTCTCTGCT
TCCCTCTGAGATGTTGTAAGCCAGATTTCCAAGCTCCCCACTCTCAAAGC
AATTTCTAGGTCTTATGTTCCAACTTCTTCCATAATCCCTCCTAAAACTT
GGTCATTGTAGTTTTTAGCATACTCCGCCCCCTCCCCTATCCAAAAATTT
ACTTGTCCCATAN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGCACCGAGCAAGAAGGCTGGGTTGC
ATGGCTGGAAGGTTGTGGCAGAAAAAAAGTCCCCCGTGGGAAAGTAATGG
TGGTAACAATCAAAAACTCTTGTGTTCAGTGTAGGGAATCGGGTGCTTAG
TTAAAAGTTGTATTTTCTGTCTCAAAAACAACCACTGAGTATCATCTGCT
TTGCTAGATAAACGTTCATTGGTTTCAGTTTTGTATCTTTAAATACAATA
GAATTTCCTGTCATGGTTTTATGCCGCCTTACCAAATATGTGTTCCTGAT
CATTGTTAGAAGTAAGAGCATCTGGGGGCTGGAGAGATGGCTCAGTGGTT
AAGATTGCTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTGCCAGCAACC
ACATGGTGGCTCCCAACCATCTGAAATGGAATCTTGATGCCCTCTTCTGG
TGTGTCTGAAGACAGCTACAGGGTACTCCTATAAATAAAATACATCTTAT
TTTACCGAACATTATTATTAATAATAATTTATATCTGCCTGTGGTTCTTT
CGAGGCCCGTTTAAATCTTTTATTTATTTCTGTGAGTTAGGCCTGACTTT
TTTTATTTTTCTGTACGACTTTTTTTTCTCCCTCGTTGGTTGTTAATTTT
TTCCTTCTAATTGTCTTTGGGAGTGCAGATCAGTATTTTGCCTCCACTCT
TTTTCAATATCCTTGGTGTTTATTAATATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c09.g1 MSMg01no355_c09.g1 CHROMAT_FILE:
MSMg01no355_c09.g1 PHD_FILE: MSMg01no355_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:31 2005
         (377 letters)



>mm_chr5_103881568_103882344
          Length = 777

 Score =  603 bits (312), Expect = e-177
 Identities = 368/406 (90%), Gaps = 34/406 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcaccgagcaagaaggctgggttgcatggctggaaggttgtggcagaaaaaaagtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 194 tgggcaccgagcaagaaggctgggttgcatggctggaaggttgtgggagaaaaaa-gtcc 252

                                                                       
Query: 61  cccgtgggaaagtaatggtggtaacaat--------caaaaactcttgtgttcagtgtag 112
           | ||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 253 ctcgtgggaaagtaatggtggtaacaattctgggatcaaaaactcttgtgttcagtgtag 312

                                                                       
Query: 113 ggaatcgggtgcttagttaaaagttgtattttctgtctcaaaaacaaccactgagtatca 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggaatcgggtgcttagttaaaagttgtattttctgtctcaaaaacaaccactgagtatca 372

                                                                       
Query: 173 tctgctttgctagataaacgttcattggtttcagtt-----------------ttgtatc 215
           |||||||||||| |||||| ||||||||||||||||                 |||||||
Sbjct: 373 tctgctttgctatataaacattcattggtttcagttctggcctcttcattgttttgtatc 432

                                                                       
Query: 216 tttaaatacaatagaatttcctgtcatggtttt----atgccgccttaccaaatatgtgt 271
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 433 tttaaatacaatagaatttcctgtcatgg----cagcatgccgccttaccaaatatgtgt 488

                                                                       
Query: 272 tcctgatcattgttagaagtaagagcatctgggggctggagagatggctcagtggttaag 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcctgatcattgttagaagtaagagcatctgggggctggagagatggctcagtggttaag 548

                                                         
Query: 332 attgctgactgttcttccagaggtcctgagttcaattgccagcaac 377
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 attgctgactgttcttccagaggtcctgagttcaattgccagcaac 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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