Query= MSMg01no355_i11.b1 MSMg01no355_i11.b1 CHROMAT_FILE:
MSMg01no355_i11.b1 PHD_FILE: MSMg01no355_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:00 2005
(502 letters)
>mm_chr5_107159448_107160349
Length = 902
Score = 760 bits (393), Expect = 0.0
Identities = 477/513 (92%), Gaps = 16/513 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgttctgacttcctttaatcataaacagtgatgtggaagtgtaagctgaatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcctgttctgacttcctttaatcataaacagtgatgtggaagtgtaagctgaatca 250
Query: 65 accctttcctccccaacttgctttggtcatggtgtttcattagggtgacagcagccttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 accctttcctccccaacttgctttggtcatggtgtttcattagggtgacagcagccttgg 310
Query: 125 ccaagacaagtatgatcttgtgagggctagtgaaataactcactgggaaaaacactagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccaagacaagtatgatcttgtgagggctagtgaaataactcactgggaaaaacactagct 370
Query: 185 gccatgttttaacagcttgagtttgatctccaggacccacatgtaggagagaatctgctc 244
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 ggcatgttttaacagcttgagtttgatctccaggacccacatgtaggagagaatgtgctc 430
Query: 245 ctgcaagttgtcatctgaatgtcacacatgtgtactgccatatgtacactgtcatattg- 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 431 ctgcaagttgtcatctgaatgtcacacatgtgcactgccatatgtacactgtcatattgc 490
Query: 304 --t-----------actgtcacatgtgtactgtctcatatgcactgtctcatgtgcattg 350
| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 491 actgtctcatgtgcactgtcacatgtatactgtctcatatgcactgtctcatgtgcattg 550
Query: 351 tcatatgtgcactgccacatgtgcactatatatgctcactgtcacatgtgcactgtctca 410
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct: 551 tcatatgtgcactgccacatgtgcactatatatgctcactgccacatatgcactgtcaca 610
Query: 411 tgtgcactctctcatgtgcactgtcatatgtgcactgccatatgtacactgtcatat-tg 469
|||| ||||||||||||||| ||||| || |||||||||| ||| || | | |||| ||
Sbjct: 611 tgtgtactctctcatgtgcattgtcacatatgcactgccacatgggcattat-atatgtg 669
Query: 470 cactgtctcatgtgcactgtcacatgtgtactg 502
|||||| |||||||||||||| ||||| ||||
Sbjct: 670 tactgtcacatgtgcactgtcatatgtgcactg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_i11.g1 MSMg01no355_i11.g1 CHROMAT_FILE:
MSMg01no355_i11.g1 PHD_FILE: MSMg01no355_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:00 2005
(456 letters)
>mm_chr5_107343259_107344114
Length = 856
Score = 665 bits (344), Expect = 0.0
Identities = 376/388 (96%), Gaps = 6/388 (1%)
Strand = Plus / Minus
Query: 1 tctagatatagagaaacaaacacatctataaggttataggaagaaaaaccaccaggaatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 tctagatatagagaaacaaacacatctataaggttataggaagaaaaaccaccaggaacc 324
Query: 61 attaaataaataaaggataggaaatcaccaaacaacacaaatcagcaaaatgaaaggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attaaataaataaaggataggaaatcaccaaacaacacaaatcagcaaaatgaaaggaat 264
Query: 121 taatgcatgcctttcaataattaaatattaatggcatcaatttcctaaagacaaatagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatgcatgcctttcaataattaaatattaatggcatcaatttcctaaagacaaatagac 204
Query: 181 tagatttaaaaaaaaaaaaaaaaaggatccagagatgggtgtagtggcacctgcctttaa 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tagattt---aaaaaaaaaaaaaaggatccagagatgggtgtagtggcacctgcctttaa 147
Query: 241 tccttag-tctctggaaggctgaggcaggtggatttctataagttcaaggctagtctggt 299
||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 146 tcc-cagcac-ctggaaggctgaggcaggtagatttctataagttcaaggccagtctggt 89
Query: 300 ctgcatagtgggtttcagggcaggtggagctacattggatgaccctattttgaaaaacaa 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ctgcatagtgggtttcaggacaggtggagctacattggatgaccctattttgaaaaacaa 29
Query: 360 tcatcatcatcatcatcatcatcatcat 387
||||||||||||||||||||||||||||
Sbjct: 28 tcatcatcatcatcatcatcatcatcat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
