Query= MSMg01no355_j16.b1 MSMg01no355_j16.b1 CHROMAT_FILE:
MSMg01no355_j16.b1 PHD_FILE: MSMg01no355_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:06 2005
(489 letters)
>mm_chr5_121371804_121372692
Length = 889
Score = 750 bits (388), Expect = 0.0
Identities = 403/408 (98%)
Strand = Plus / Minus
Query: 82 ttagaaagacagaatagccttctcagagccagcctcaagaattgagcaacctctggattc 141
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 889 ttagaaagacagaatagccttctcagaaccagcctcaagaattgagcaacctctggattc 830
Query: 142 ttagacttttcagacatagccagtccttgttggatcaatgggatgacagcctgtaaggca 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttagacttttcagacatagccagtccttgttggatcaatgggatgacagcctgtaaggca 770
Query: 202 ttctaataaatatcccttctgatagtagagatagattcattttataagttctactactct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttctaataaatatcccttctgatagtagagatagattcattttataagttctactactct 710
Query: 262 ggaaaaccacagctaatacaagagagaacccaaccttgggtaggttccctgctaatccat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggaaaaccacagctaatacaagagagaacccaaccttgggtaggttccctgctaatccat 650
Query: 322 agccatggctgccattttttatcttaaaggtcctcatctttccattcccccatgaagaaa 381
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acccatggctgccattttttatcttaaaggtcctcatctttccattcccccatgaagaaa 590
Query: 382 tgggatgcagacattacaaataatgcatggcattacattagtgtggggagatgagggaag 441
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgggatgcagacattacaaatcatgcatggcattacattagtgtggggagatgagggaag 530
Query: 442 acatgatgggtccatagcttggctggggaccacgggccatggtttatt 489
|||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 529 acatgatgggtccacagcttggctggggaccacgagccatggtttatt 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_j16.g1 MSMg01no355_j16.g1 CHROMAT_FILE:
MSMg01no355_j16.g1 PHD_FILE: MSMg01no355_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:06 2005
(497 letters)
>mm_chr5_121223347_121224244
Length = 898
Score = 868 bits (449), Expect = 0.0
Identities = 476/485 (98%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 14 aaagtctccaaaagagcacttttcatcagcctcggtcatcacaaaaa-aactttgccttt 72
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 214 aaagtctccaaaagagcacttttcatcagcctcggtcatcacaaaaagaactttgccttt 273
Query: 73 agggtggagggaggcaaaccagaatagcgtagtgaggaccaggcccctgccccaggaccg 132
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct: 274 agggtggagggaggcaaaccaaaatagcgtagtgaggaccaggcacctgccccaagactg 333
Query: 133 cagagacaggggaactaggtatttctggctcctgggtatcttaagatcgatatatttagg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagagacaggggaactaggtatttctggctcctgggtatcttaagatcgatatatttagg 393
Query: 193 caagaagccaagatccagagagggctaggggctctcctcggtcacacagcaagtgggtag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caagaagccaagatccagagagggctaggggctctcctcggtcacacagcaagtgggtag 453
Query: 253 aaggtcaaaaggcaatggccaatctttctcctaatgatgatgcccccatctctggaccaa 312
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 454 aaggtcaaaaggcaatggccaatctttctcctaatgatgatgcccccgtctctggaccag 513
Query: 313 gccagggacctctcacctaggacatcaaaggcaggcaccaggctaacatctatccagtgt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gccagggacctctcacctaggacatcaaaggcaggcaccaggctaacatctatccagtgt 573
Query: 373 tctccatctgccgatgccagacgaaactgtaagatcctggacgcctttgactgagaaaac 432
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctccgtctgccgatgccagacgaaactgtaagatcctggacgcctttgactgagaaaac 633
Query: 433 tcaaaagtcaggccaggcctggggtggcccccccaggactccagcaacattcgcatggca 492
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcaaaagtcaggccaggcccggggtggcccccccaggactccagcaacattcgcatggca 693
Query: 493 cccag 497
|||||
Sbjct: 694 cccag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space: 432456
Effective search space used: 432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|