BAC Information

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BAC

Clone NameMSMg01-355J16
Chromosome5 (Build37)
Map Location 121,223,560 - 121,372,692
singlet/doubletdoublet
Overlap geneOas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d
Upstream geneEG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2
Downstream geneOas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355J16.T7 (MSMg01no355_j16.b1)MSMg01-355J16.TJ (MSMg01no355_j16.g1)
ACCAG465952AG465953
length754754
length of high quality
(start - end)
489 (66 - 554)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no355_j16.b1 PHD_FILE: MSMg01no355_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:06 2005CHROMAT_FILE: MSMg01no355_j16.g1 PHD_FILE: MSMg01no355_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:06 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(121,372,285 - 121,372,692)(121,223,560 - 121,224,044)
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATCTCTACAAAGAAGTGTGGCAGTGGGCCCAGGATGGCGGAG
GCCGCGTGGCTTGTACCATGGGTACCCACCTGAAGCAGCTGACCTGTTAG
AAAGACAGAATAGCCTTCTCAGAGCCAGCCTCAAGAATTGAGCAACCTCT
GGATTCTTAGACTTTTCAGACATAGCCAGTCCTTGTTGGATCAATGGGAT
GACAGCCTGTAAGGCATTCTAATAAATATCCCTTCTGATAGTAGAGATAG
ATTCATTTTATAAGTTCTACTACTCTGGAAAACCACAGCTAATACAAGAG
AGAACCCAACCTTGGGTAGGTTCCCTGCTAATCCATAGCCATGGCTGCCA
TTTTTTATCTTAAAGGTCCTCATCTTTCCATTCCCCCATGAAGAAATGGG
ATGCAGACATTACAAATAATGCATGGCATTACATTAGTGTGGGGAGATGA
GGGAAGACATGATGGGTCCATAGCTTGGCTGGGGACCACGGGCCATGGTT
TATTAGAACCCTGTGTGTCTGGGGGTATTTCAGAAGGGCAAGACTGGAAT
CATAGACCAGCATCCCTGGGTCCCCCAACAGCTCATATAAAGGACAGGGA
GGGTGCGGCTTTGTCCTGTGTTGCACGGGAACAACACCCTCTTTATATGA
GTTACCCTGTGGGCCCCTGGGCCCTCTTTTTCTCTTGGAGTGAATTTTTC
TACG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATCTCCAAAAAGTCTCC
AAAAGAGCACTTTTCATCAGCCTCGGTCATCACAAAAAAACTTTGCCTTT
AGGGTGGAGGGAGGCAAACCAGAATAGCGTAGTGAGGACCAGGCCCCTGC
CCCAGGACCGCAGAGACAGGGGAACTAGGTATTTCTGGCTCCTGGGTATC
TTAAGATCGATATATTTAGGCAAGAAGCCAAGATCCAGAGAGGGCTAGGG
GCTCTCCTCGGTCACACAGCAAGTGGGTAGAAGGTCAAAAGGCAATGGCC
AATCTTTCTCCTAATGATGATGCCCCCATCTCTGGACCAAGCCAGGGACC
TCTCACCTAGGACATCAAAGGCAGGCACCAGGCTAACATCTATCCAGTGT
TCTCCATCTGCCGATGCCAGACGAAACTGTAAGATCCTGGACGCCTTTGA
CTGAGAAAACTCAAAAGTCAGGCCAGGCCTGGGGTGGCCCCCCCAGGACT
CCAGCAACATTCGCATGGCACCCAGGGTCTCTGAGTGACAGGTCTTCTGG
TCACCAAAGCTCTGGAAGCAGTCGAGGAAAATGACGAGTTCCACATCGGT
GTCACCTCCGTAAACTGTGTCCCGGGGTTAGGCTCCTCCCTGTGAAGAAA
AAAACCGCTGGGGAATAACTTCACCCTCTGGGAACTGTTCCCCATAAGGC
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_j16.b1 MSMg01no355_j16.b1 CHROMAT_FILE:
MSMg01no355_j16.b1 PHD_FILE: MSMg01no355_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:06 2005
         (489 letters)



>mm_chr5_121371804_121372692
          Length = 889

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  ttagaaagacagaatagccttctcagagccagcctcaagaattgagcaacctctggattc 141
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 889 ttagaaagacagaatagccttctcagaaccagcctcaagaattgagcaacctctggattc 830

                                                                       
Query: 142 ttagacttttcagacatagccagtccttgttggatcaatgggatgacagcctgtaaggca 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttagacttttcagacatagccagtccttgttggatcaatgggatgacagcctgtaaggca 770

                                                                       
Query: 202 ttctaataaatatcccttctgatagtagagatagattcattttataagttctactactct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttctaataaatatcccttctgatagtagagatagattcattttataagttctactactct 710

                                                                       
Query: 262 ggaaaaccacagctaatacaagagagaacccaaccttgggtaggttccctgctaatccat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggaaaaccacagctaatacaagagagaacccaaccttgggtaggttccctgctaatccat 650

                                                                       
Query: 322 agccatggctgccattttttatcttaaaggtcctcatctttccattcccccatgaagaaa 381
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acccatggctgccattttttatcttaaaggtcctcatctttccattcccccatgaagaaa 590

                                                                       
Query: 382 tgggatgcagacattacaaataatgcatggcattacattagtgtggggagatgagggaag 441
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgggatgcagacattacaaatcatgcatggcattacattagtgtggggagatgagggaag 530

                                                           
Query: 442 acatgatgggtccatagcttggctggggaccacgggccatggtttatt 489
           |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 529 acatgatgggtccacagcttggctggggaccacgagccatggtttatt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no355_j16.g1 MSMg01no355_j16.g1 CHROMAT_FILE:
MSMg01no355_j16.g1 PHD_FILE: MSMg01no355_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:06 2005
         (497 letters)



>mm_chr5_121223347_121224244
          Length = 898

 Score =  868 bits (449), Expect = 0.0
 Identities = 476/485 (98%), Gaps = 1/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  aaagtctccaaaagagcacttttcatcagcctcggtcatcacaaaaa-aactttgccttt 72
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 214 aaagtctccaaaagagcacttttcatcagcctcggtcatcacaaaaagaactttgccttt 273

                                                                       
Query: 73  agggtggagggaggcaaaccagaatagcgtagtgaggaccaggcccctgccccaggaccg 132
           ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct: 274 agggtggagggaggcaaaccaaaatagcgtagtgaggaccaggcacctgccccaagactg 333

                                                                       
Query: 133 cagagacaggggaactaggtatttctggctcctgggtatcttaagatcgatatatttagg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagagacaggggaactaggtatttctggctcctgggtatcttaagatcgatatatttagg 393

                                                                       
Query: 193 caagaagccaagatccagagagggctaggggctctcctcggtcacacagcaagtgggtag 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caagaagccaagatccagagagggctaggggctctcctcggtcacacagcaagtgggtag 453

                                                                       
Query: 253 aaggtcaaaaggcaatggccaatctttctcctaatgatgatgcccccatctctggaccaa 312
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 454 aaggtcaaaaggcaatggccaatctttctcctaatgatgatgcccccgtctctggaccag 513

                                                                       
Query: 313 gccagggacctctcacctaggacatcaaaggcaggcaccaggctaacatctatccagtgt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gccagggacctctcacctaggacatcaaaggcaggcaccaggctaacatctatccagtgt 573

                                                                       
Query: 373 tctccatctgccgatgccagacgaaactgtaagatcctggacgcctttgactgagaaaac 432
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctccgtctgccgatgccagacgaaactgtaagatcctggacgcctttgactgagaaaac 633

                                                                       
Query: 433 tcaaaagtcaggccaggcctggggtggcccccccaggactccagcaacattcgcatggca 492
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcaaaagtcaggccaggcccggggtggcccccccaggactccagcaacattcgcatggca 693

                
Query: 493 cccag 497
           |||||
Sbjct: 694 cccag 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)