Query= MSMg01no355_p20.b1 MSMg01no355_p20.b1 CHROMAT_FILE:
MSMg01no355_p20.b1 PHD_FILE: MSMg01no355_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:35 2005
(514 letters)
>mm_chr5_31842597_31843510
Length = 914
Score = 870 bits (450), Expect = 0.0
Identities = 485/498 (97%), Gaps = 5/498 (1%)
Strand = Plus / Minus
Query: 18 actactatttttaaataaggagaaaaaa-aatattccagcagtaagcaaagtaaatcatg 76
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 914 actactatttttaaataaggagaaaaaacaatattccagcagtaagcaaagtaaatcatg 855
Query: 77 gggaaaaatatcaccataggcacttcattcctaaatatgacacacattagaaacgttaaa 136
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 854 gggaaaaatatcaccataggcacttcattcctaaatatggcacacattagaaacattaaa 795
Query: 137 ctagctccaggactgccggggctacacagtgagactgctgaaagaaaaggggtaggggga 196
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctagct-caggactgccagggctacacagtgagactgctgaaagaaaaggggtaggggga 736
Query: 197 gaaagaaaaaaagaaaaaaagaaaagaaactaaactaataaactaattaaaaaaaaaata 256
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaaagaaaga---aaaaaaagaaaagaaactaaactaataaactaattaaaaaaaaaata 679
Query: 257 tccgagttctttccaagtcgcctgtgtctgtgtgcacacgaggccaggggaggcgtcagc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tccgagttctttccaagtcgcctgtgtctgtgtgcacacgaggccaggggaggcgtcagc 619
Query: 317 tgtcctcctccatcactctccacctccctgcttactgaccctgcagcccagcaaggctgt 376
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 618 tgtcctcctccatcactctccacctccctgcttactgaccctgcagcccagcgaggctgt 559
Query: 377 cagtcagcaagccccagcaaccctgcctttgcagccctctgtgctggggtcacactacac 436
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 558 cagtcagcaagccccagcaaccctgcctttgcagccctccgtgctggggtcacactgcac 499
Query: 437 agggccatgcttcactttacatggggtactgggccccgaactctggacttcatacttggg 496
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agggccatgcttcactttacacggggtactgggccccgaactctggacttcatacttggg 439
Query: 497 agcgacacctgagccatc 514
||||||||||||||||||
Sbjct: 438 agcgacacctgagccatc 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_p20.g1 MSMg01no355_p20.g1 CHROMAT_FILE:
MSMg01no355_p20.g1 PHD_FILE: MSMg01no355_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:35 2005
(442 letters)
>mm_chr5_31778425_31779266
Length = 842
Score = 803 bits (415), Expect = 0.0
Identities = 435/447 (97%), Gaps = 10/447 (2%)
Strand = Plus / Minus
Query: 1 tgggaaatagtccaaaacggcaatatatttgacaaaatctagctaaggcaaactctcaca 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgggaaatagtccaaaatggcaatatatttgacaaaatctagctaaggcaaactctcaca 583
Query: 61 gccagagcgcacagcacacgtcacagcccgtcatgcctctccgtccactatgtcctgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gccagagcgcacagcacacgtcacagcccgtcatgcctctccgtccactatgtcctgagc 523
Query: 121 cacgtggttccaccttctctgcttcctttcaccttgcttttgacattcttgattcctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacgtggttccaccttctctgcttcctttcaccttgcttttgacattcttgattcctctc 463
Query: 181 cacaaatcatcaaatgcccagggtcattagagaccatggaacagtgctttgcactgtgtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 462 cacaaatcatcaaatgcccagggtcattagagaccatggaacagtgctttgcactgtggc 403
Query: 241 -----ttttttaccatggaaccccagaatcccattggcaatactgagtttaaggacttag 295
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaagg-----taccatggaaccccagaatcccattggcaatactgagtttaaggacttag 348
Query: 296 aaactctcccaatgacactgtcctaagcgctgctactcagatctggccgagatgtctaca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaactctcccaatgacactgtcctaagcgctgctactcagatctggccgagatgtctaca 288
Query: 356 atatccttgtgccttcaactgagacttccctctccctgcctgaagtgtgggtttcagtgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatccttgtgccttcaactgagacttccctctccctgcctgaagtgtgggtttcagtgg 228
Query: 416 tgctcatttgtgtgaggggaaacttct 442
|||||||||||||||||||||||||||
Sbjct: 227 tgctcatttgtgtgaggggaaacttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
