BAC Information

Click to search

BAC

Clone NameMSMg01-356B07
Chromosome5 (Build37)
Map Location 143,698,118 - 143,698,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356B07.T7 (MSMg01no356_b07.b1)MSMg01-356B07.TJ (MSMg01no356_b07.g1)
ACCAG466312AG466313
length766771
length of high quality
(start - end)		488 (41 - 528)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no356_b07.b1 PHD_FILE: MSMg01no356_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:42 2005CHROMAT_FILE: MSMg01no356_b07.g1 PHD_FILE: MSMg01no356_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACGTAGTTCACACCTCGAATCGCCTCTCCGGGATAGGCTGCTATGTTCA
TGGCAGCCGCCAGGTGGCGACAGAGACGCGCCCATCGACTCAGGCTGGGC
GGGGCTGTACCTGCCTATGCGGAGAACTGCAGGGGAGACGCCCACAGACC
CATTTAGGAGGAAGAATTCTGAGTTCTAAAAGGCAAAATATCCCAGGCCT
GGTTGTGAAGGCCTTTAATCCTAAGGCTTAGGAGGCCGAGGCAGGCCGAT
CTCTATGAGTTTGAGGCCAGCCTGGTCTACCTAGTAAGTTCCAAGACAGC
CAGGGCTATGTAGGTATGTAAAGAGATTCTGTCTAGATGACCTGAGTTTA
ATCCTTGGTATGCACACGAAAAACTGGATTCAGGGCCATGCATCTGTAAC
CCCAGAACTCCTATAGCAAGACGAGAGAATGAGACAGGAGAATCTCCAGG
AAACTGGCTCGCTGGCCAGCTAGCCTATATAGGGGAAGAGTAGTAGCAGA
GAATATATACTGGAAATGCTCCTGTGCTGGGGGCGTACACTGGCTATGTG
GCATTTATCCTTGGTCCTAGTCTTTTCCGAGGGTTGCGTCCGCAGTCTCC
TTGGTGCTGCCGTTACTTTTTCTCTGTCTTTTCCACCCTCTCTTCCTTTT
TTTTCTTTCCCTCCTTCCCCGTTCCTCNGTGCCGTTCCACTTCTCCAACT
ACTCCGCGTTGCCGTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCC
ACCACCACCTGGCTTGTTTGTTTGTTTTGTTCCTTTTGTTTGATTGGTTG
GTTGACTTTTTTTTAGACAGTCTCACTCTGTAGCCCTGACTGGCCTAGAA
CTCCCAGTGCAGACCAGGCTGGCCTGTTTGTTTGTTTGTTTGTTTGTTTG
TTTTTTGANACNNNNTTTTTCTGTTTTTTCCTGTTTGTTCCGTTCTTCTC
CTTGTTTCTTTTTCCTTTTCTTTTCCTCCTGCTTTTTTCTGTCTCTCGTC
CTTTGTGTTCTTCCTTCCCTTTTGTTTTGCTTCTTTTGTCTTTTTTTGTC
TCGCCCCTTTTTGTCTGTTTTTCCTTCCTGCCCTTTTTTTTTCTGTGTTC
CTTTGCTCTCTTTTTCCTCCCTTTTTCCTTCCTTTCCTTCTTTTCCCCCT
CCCCCTTTTTTTTTTTTTTCCCTTTCTTTCCTCCCTTTTCTTCCTTTTTC
TTTTTCTCTTTTTTCTTTTTCTTTTCCCTTCCCCTCTTTCTCCCCTCTTC
TTTTTTCCCCCTTTTTTCTCCTTTTCTCGTTCCTTTTTTTATTTCTTTCC
CTTTTTATTTCTCCCTCTGTTTCCTTTTTTCTCTTCTTCTTTCTTCCCCC
CACTTTTTTCATTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_b07.b1 MSMg01no356_b07.b1 CHROMAT_FILE:
MSMg01no356_b07.b1 PHD_FILE: MSMg01no356_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:42 2005
         (488 letters)



>mm_chr5_143697914_143698801
          Length = 888

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgtagttcacacctcgaatcgcctctccgggataggctgctatgttcatggc 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccacgtagttcagacctcgaatcgcctctccgggataggctgctatgttcacggc 264

                                                                       
Query: 65  agccgccaggtggcgacagagacgcgcccatcgactcaggctgggcggggctgtacctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccgccaggtggcgacagagacgcgcccatcgactcaggctgggcggggctgtacctgc 324

                                                                       
Query: 125 ctatgcggagaactgcaggggagacgcccacagacccatttaggaggaagaattctgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctatgcggagaactgcaggggagacgcccacagacccatttaggaggaagaattctgagt 384

                                                                       
Query: 185 tctaaaaggcaaaatatcccaggcctggttgtgaaggcctttaatcctaaggcttaggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctaaaaggcaaaatatcccaggcctggttgtgaaggcctttaatcctaaggcttaggag 444

                                                                       
Query: 245 gccgaggcaggccgatctctatgagtttgaggccagcctggtctacctagtaagttccaa 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gccgaggcaggccgatctctatgagtttgaggccagcctggtctgcctagtaagttccaa 504

                                                                       
Query: 305 gacagccagggctatgtaggtatgtaaagagattctgtctagatgacctgagtttaatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacagccagggctatgtaggtatgtaaagagattctgtctagatgacctgagtttaatcc 564

                                                                       
Query: 365 ttggtatgcacacgaaaaactggattcagggccatgcatctgtaaccccagaactcctat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttggtatgcacacgaaaaactggattcagggccatgcatctgtaaccccagaactcctat 624

                                                                       
Query: 425 agcaagacgagagaatgagacaggagaatctccaggaaactggctcgctggccagctagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcaagacgagagaatgagacaggagaatctccaggaaactggctcgctggccagctagc 684

              
Query: 485 cta 487
           |||
Sbjct: 685 cta 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |