Query= MSMg01no356_b10.b1 MSMg01no356_b10.b1 CHROMAT_FILE:
MSMg01no356_b10.b1 PHD_FILE: MSMg01no356_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:43 2005
(497 letters)
>mm_chr5_62430259_62431155
Length = 897
Score = 814 bits (421), Expect = 0.0
Identities = 466/491 (94%), Gaps = 18/491 (3%)
Strand = Plus / Plus
Query: 4 ggaattctagattttgtatataatttcattcattttgaatcctattcctcataaataaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagattttgtatataatttcattcattttgaatcctattcctcataaataaat 263
Query: 64 aaagcattctctgtggtttctggaaataaaagctatctgaatttctagaacatatgaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagcattctctgtggtttctggaaataaaagctatctgaatttctagaacatatgaaac 323
Query: 124 tgtccatatatatat--ata-tatatatatatatatatatatatatatatataggacatt 180
||||||||||||||| | | ||||||||| |||| ||||||||||
Sbjct: 324 tgtccatatatatatggacagtatatatat---------------tatacataggacatt 368
Query: 181 agaatcactcaggctgattcagccaccatctccccaatgattaggtctggtaagaaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 agaatcactcaggctgattcagccaccatctccccaatgattagatctggtaagaaaaaa 428
Query: 241 gatggactattatcaagatgttatctattttagtattagtgatgtacataaatattgtac 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 gatggactattatcaagatgttatctattttagtattagtgatatacataaatattgtac 488
Query: 301 caagcatgtcgtcatcactgttgaggaggatcagtcatgcaatgatatttatttagcaag 360
|||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 489 caagcatgtcatcatcactgttgaggaggatcagtcgtgcaatgatatgtatttagcaag 548
Query: 361 ttgtcataggcaactggtcaaaagtgatttgtgtaaaactcacacaaaaagtcagaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgtcataggcaactggtcaaaagtgatttgtgtaaaactcacacaaaaagtcagaaaag 608
Query: 421 aagagtgatgaccagtgtttttcacgaaaaatgtttaatatttaatcattactacagata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagagtgatgaccagtgtttttcacgaaaaatgtttaatatttaatcattactacagata 668
Query: 481 atagtacacct 491
|||||||||||
Sbjct: 669 atagtacacct 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_b10.g1 MSMg01no356_b10.g1 CHROMAT_FILE:
MSMg01no356_b10.g1 PHD_FILE: MSMg01no356_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:43 2005
(443 letters)
>mm_chr5_62573103_62573946
Length = 844
Score = 789 bits (408), Expect = 0.0
Identities = 435/444 (97%), Gaps = 3/444 (0%)
Strand = Plus / Minus
Query: 1 ttcaggaaaatttcatatatgaggttcatatttatttttcatgggaatatataaatgtta 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 643 ttcaggaaaatttcatatgtgaggttcatatttatttttcatgggaatatataaatatta 584
Query: 61 aaagaaagttaaaacaagccactgatttctattatcgagtaatatgatttattttaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaagaaagttaaaacaagccactgatttctattatcgagtaatatgatttattttaagga 524
Query: 121 ataatccagactttattaatttaaaagcagaagtactcattaaaattattttgtagaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ataatccagactttattaatttaaaagcagaagtactcattaaaattattttgtagaaac 464
Query: 181 cctttttacatcttctgtattacactg-tttttggaaaatctcagccacatctcttggca 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 463 cctttttacatcttctgtattacactgttttttggaaaatctcagccacatctcttggca 404
Query: 240 aagatggtagtgttttcctggtatacaaaatttctaatagaataatttgataaaataccc 299
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 403 aagatggtagtgtttccctggtatacagaatttctaatataataatttgataaaataccc 344
Query: 300 aaatattctcacctgtctcacctgatccttacatgctttcagtacagaacatggtcc-tt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 343 aaatattctcacctgtctcacctgatccttacatgctttcagtacagaacatggtccgtt 284
Query: 359 catcatcccatactatctcaggaattgagtttagcacctgatattctccatacatctctg 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 -atcatcccataatatctcaggaattgagtttagcacctgatattctccatacatctctg 225
Query: 419 aaacctatgagttatcaatcattc 442
||||||||||||||||||||||||
Sbjct: 224 aaacctatgagttatcaatcattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
