BAC Information

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BAC

Clone NameMSMg01-356C12
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,090
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356C12.T7 (MSMg01no356_c12.b1)MSMg01-356C12.TJ (MSMg01no356_c12.g1)
ACCAG466368AG466369
length743748
length of high quality
(start - end)		463 (41 - 503)424 (69 - 492)
definitionCHROMAT_FILE: MSMg01no356_c12.b1 PHD_FILE: MSMg01no356_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005CHROMAT_FILE: MSMg01no356_c12.g1 PHD_FILE: MSMg01no356_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTATGACTTGGCATCACCCGACTGGCCCATGAACCTTTGTGGGCCA
TTTTCTATTTTTTTTCTATTTTTTTCCATTTTTTATTAGGTATTTAGCTC
ATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCC
ACTCTCCTACCCACCCACTTCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC
TGGGGCATATAAAGTTTGCGTGTCCAATGGTCCTCTCTTTCCAGTGATGG
CCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGG
GGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCT
TTAGCTCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCC
ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGC
ATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGACAAAATCTTGC
TAGTGTATGCAATGGTGTCACTGTTTGGATGCTGATTATGGGGTGGAACC
CTGGACATGGCAGTCTCTAGATGGCCCTCCTTTTATTTTAGATCCCAAAT
TTGTTCTTGTAATCTCTCACGGGTGTTCTGTTCCCCCCCCTAATGAGGTG
TTAGTGCCTTTCCCCCCCTCTCGCCCTTTCGTTAATTCCGGTN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTTTGTCAAG
TTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCATTG
AAAGTCTGAGTAGTCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCT
GACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGT
CCCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAA
GACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGGTAGGG
TAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTCC
TTCCATGGGTATTTTGTTCCCTATTCCGATACTACTGCATATGCCAGCAA
TTTTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTATGGCTATGCCAGT
ACCTGGCAAACAGAAGTGTATGCTCACAGTCATTTATAGGATGGAGCACA
TGGGCTCCATTGGAAATCTAATACAAGTCCCCTAGAGCTGATGGGACTGT
CTCCCTTTAGTGGTAACTTGAAATTAATTACCTTTTCCCCCCCAATTTGG
TTTTTCCCTCCTTATTTGTTAAAAATGTGCTACTCCCCTTCTTGCTTTAT
TACCCCTTGTTTCTCCTTTTTATTTTGCCTTTACACCTGCCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_c12.g1 MSMg01no356_c12.g1 CHROMAT_FILE:
MSMg01no356_c12.g1 PHD_FILE: MSMg01no356_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:48 2005
         (424 letters)



>mm_chr5_15112473_15113296
          Length = 824

 Score =  716 bits (370), Expect = 0.0
 Identities = 406/418 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagtcggtgggcatccctgcacatgtgc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtccctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttggtggctgattatgggatggatccccgggtagggtagtctctggatggtcca 300
           |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 301 tcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttccctattccg 360
           ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctg 560

                                                                     
Query: 361 atactactgcatatgccagcaattttttgctgaaaggaccttgatatagctgtcttgt 418
           | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 561 acactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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