BAC Information

Click to search

BAC

Clone NameMSMg01-356F11
Chromosome5 (Build37)
Map Location 140,631,847 - 140,632,263
singlet/doubletsinglet
Overlap geneMad1l1
Upstream geneHeatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F11.T7 (MSMg01no356_f11.b1)MSMg01-356F11.TJ (MSMg01no356_f11.g1)
ACCAG466506AG466507
length728963
length of high quality
(start - end)		566 (43 - 608)---
definitionCHROMAT_FILE: MSMg01no356_f11.b1 PHD_FILE: MSMg01no356_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:02 2005CHROMAT_FILE: MSMg01no356_f11.g1 PHD_FILE: MSMg01no356_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCATGTTCCCCTCCCTGCTTGTTTTAGGAACACCAGGATTACTGCA
ATGTCTGGCTTTGCTTAGTTTCTGGGGATTTGAAGTCAGATCTTTACACT
TGCCTACTGAGCCAGCTTCCCTGCCCTCAGTCCTTGGCTATACTTTCACA
GGCCTCCTGGACTGTTCAGTGATCCAGCCCTCGCTGTGCTCTTCCTGGGT
TCTGTGAGTTTTCACTCGTTTCTGTTCTTGTCTGTATTCTTTTCTTTTTC
TTGCTTTGGGCTCACATTGTTCTCGTTTGCATAGTTTCTCTCCTGGAAGC
TTAGGTGATTTTAGACCTTTGTAAAACACACATGCAGGGCTGTAAGTTTC
TCTCTGAGTCCGTGCTTACTGTTTTCTACAACTCTCAGTAAAGTTGCATT
GCTTTCTTATTGTTCCAAACCATTGTTGAGTTTTTCTTGAGTAGTTTTTT
GTTGTTGTTGTTGTTCGTTTGTTTGTTTTGGCCTGTGCATTAATTATAAA
TGGCTTGTTAATTTCTATTCATTTGGGGGCCTCACCCTCAGCTCTTTTGC
AGCTGGTACCCAGTTTAATTCAGTGACCACATTCTTCTTTTGTCCATTCC
CTGTGGTGGCGTTTCTGGCCCCAGTGTGCTGCTTTGCAAGCGTCCCCTGT
GATTTTGGGGAATACGCTCTCCACCACA

CCCCCGGGCCCCNCCCCCCCCCNCNCCCCCCCCCCCCCCCCCCCCCCNNC
NCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCNCCCNCCCCCNCCCCCCC
CNNNCCCCCACCCNNNNNCCCCCNCCCCCCCCCCCNNCCCCCCCCCCNCC
CCCCCCCCNCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCNNCCCCCCCCC
CCCCNNNNGGCCCCCCCCCCCCCCCCCCCCCCNNNCNCCCNNNNNNCCCC
CCCCCCCCCCAAAAAAAATATTNNNNACCACAAAAAAANCCTGNCCCCNN
NNCNCCNNCAAAAAAANNNNCCCCCCCCCTTGGNNNNNCCCCNNNNNNNC
CCCCCGGNNCCCCCCCNGGGNNNTTTCCTTGCCTTTCAAAAAAACCAATT
TANTTTTTAAANNNNNGNNNNNNNNTTGGGAGAAAACACCACCCCTTAAA
TTTAAAANCAAAANAAAAGTGTGAATAACTCCNCCCCCCACAGAAAAAAA
AAAAAAATTTTTTCCCCCCNCCCAGGGNNTTTTGGGNGACCCCCCAAANN
NTCCCNCAAAAAAAAAANNNAAAAATGAGGGCCCCCCCAAAACCCTTTGT
GTTTTCCCTTTGGGTTGGAAACCCCCCCCTTTTTTTGGGGGGCCCCCCAA
AGGGCCCCCCCCTTCCCCACAAAGGGGNAAAAAACAATTTTTTTTTTTTT
TGTGGGGNNNNNCAAAAAAAAGGACGCCCCCNCCCCCCCCCCCAAACANN
NNCCCCCCCTTTCCCCAAAAAATTTTTTTTTGTTGGGNNNGGCCCTTTTT
CCCACAAAAAANNAAAAAAAACTTTTCCCAAAAAGAAGNNNNAAAATATT
GTTTTNGNTTGTTTTGTATTCCTCCTACTCCTAACTCTAANNNNNNNNAA
AACACACCCCNNCCCCCCATTAATATNNTNAAAAAATATGTCATCAATAC
CNNNNTTAAANCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f11.b1 MSMg01no356_f11.b1 CHROMAT_FILE:
MSMg01no356_f11.b1 PHD_FILE: MSMg01no356_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:02 2005
         (566 letters)



>mm_chr5_140631847_140632812
          Length = 966

 Score =  702 bits (363), Expect = 0.0
 Identities = 406/425 (95%), Gaps = 9/425 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctctcatgttcccctccctgcttgttttaggaacaccaggattactgcaatgtctgg 66
           ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 417 attctctcatgctcccctccctgcttgttctaggaacaccaggatcactgcaatgtctgg 358

                                                                       
Query: 67  ctttgcttagtttctggggatttgaagtcagatctttacacttgcctactgagccagctt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctttgcttagtttctggggatttgaagtcagatctttacacttgcctactgagccagctt 298

                                                                       
Query: 127 ccctgccctcagtccttggctatactttcacaggcctcctggactgttcagtgatccagc 186
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 297 ccctgccctcagtccctggctatactttcgcaggcctcctggactgttcagtgatccagc 238

                                                                       
Query: 187 cctcgctgtgctcttcctgggttctgtgagttttcactcgtttctgttcttgtctgtatt 246
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 237 cctcactgtgctcttcctgggttctgtgagttttcactcatttctgttcttgtctgtatt 178

                                                                       
Query: 247 cttttctttttcttgctttgggctcacattgttctcgtttgcatagtttctctcctggaa 306
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 177 cttttctttttcttgctttgggctcacattgttctcctttgcatagtttctctcctggaa 118

                                                                       
Query: 307 gcttaggtgattttagacctttgtaaaacacacatgcagggctgtaagtttctctctgag 366
           |||||||||||| |||||||||||||||||||||||        ||||||||||||||||
Sbjct: 117 gcttaggtgattctagacctttgtaaaacacacatg--------taagtttctctctgag 66

                                                                       
Query: 367 tcc-gtgcttactgttttctacaactctcagtaaagttgcattgctttcttattgttcca 425
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ccccgtgcttactgttttctacaactctcagtaaagttgcattgctttcttattgttcca 6

                
Query: 426 aacca 430
           |||||
Sbjct: 5   aacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |