BAC Information

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BAC

Clone NameMSMg01-356N18
Chromosome5 (Build37)
Map Location 70,337,609 - 70,337,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356N18.T7 (MSMg01no356_n18.b1)MSMg01-356N18.TJ (MSMg01no356_n18.g1)
ACCAG466901AG466902
length761781
length of high quality
(start - end)		474 (38 - 511)412 (73 - 484)
definitionCHROMAT_FILE: MSMg01no356_n18.b1 PHD_FILE: MSMg01no356_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:42 2005CHROMAT_FILE: MSMg01no356_n18.g1 PHD_FILE: MSMg01no356_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
AATGGTTACAGAAGCCATAACATGTACTCAGAGAACATGGTACAGTCCTG
TGTTGGCCTTGAGCGTGATTCCCCAGTCTGTGTAAGATCACATAAACTTT
GATTATGGTGATTTAGAGGAACATGTTTTCTTGGTGTTCTCCTGCTCCTC
TGATCCTTACATTCTTCCTGCCTCCTCTTACGTGGAGTTCCCTGAGTCCT
TGGGGAGATTTTTTATGGAGACATCCCATTTACTATTGTGTGTTCCAAGG
AGCCTCATACTCTGCATGTTGTCTGGCTGTGGATGCCTTTATTTGTTTTC
ATTTGATACAATAGGAAGCTATTGTGATGGTTGCTGAAAAGATACTGGTC
TTTGAGTATAGCGGTATGTCATCAGGAGCCATTTTTTTAAAAGTAGTATT
CTGTTTTATTGGAGGACCCTGACTATGGAATCTAAGGTTCTAGGTCACCC
AGGGAGTGCCAGGGGTGGGTTCCATCACAAGGGGGTGTGCTTTCAGTCAA
ATAAAATATTGGTTGGTCCTTCCCCATTGCTGCAACAATATTCTTGACTA
AAGACATTTTTGTAAATCCAAGGGTTTTTAGTTGTTTTTGATCCCATGTT
TTTTTTTTTTTCTTTCCATATACATTTCTAGTATCTCCAAATTTATACCT
CCTTCTCACGTTTTATCTATTTTACTCCTTTTATCCCCCCCACTTTTTAT
CTTTCTTCTTT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCCATTTCTCTTAGATTTTTCAGTTTG
GTAGAGTACAGCCTCTAAATTTCTTCAGTGCCTGTTGTAATGGGCCTATT
GTAATTTTGAATTTTATTTATCTGAATCTTCTCTGTGTTTTAGTTAATTT
AGAAAAAAATTAACCAATCTTACTGACTTTCTCCAAAGCCAACACTTGTA
TTCATTCATTTTTGTAAGTTTTTTTATATTGACACATCCTGAGTTAAATT
ATTTTCTGTGGTTTTGGAATATTTTTTATGATGAACCATAAATAGTAGTT
ATATTTATAGATTAAGAACTATTATTGCATAGCTCAGTGACAATAGGCTA
CTTACTCTTCCATTCGAAATGGAAACACTTCATAGAGTCAATGCAGAGTA
AGCCTAGTGTTTTAGATAAAGTAAAGACCAATTTAGAAACCTCAGACTAG
TTTTTTCAAATGAGTAATTTTACTGAACTTTCCTTTTTTTGCCCCCAAGA
CAAGGNTTCTCTTGATAGATGTCTCTGGGTGTCCTGGAACTTATTCTGGA
TAAAAGGTTGGGCTCCAATTCAAAATCCCCCGTGCTTCTGCTCTCCATGG
TGGGGATTGTAAAATTTCCCTTCCCTGCCGCTGGTAACTTTCAATTTTTT
TTACCATTAACCCTTTTCGTTTATATTTAACGTTGAAAACATACACCTTA
ACTTTTTTTCCTCTCTTACTAATCTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_n18.g1 MSMg01no356_n18.g1 CHROMAT_FILE:
MSMg01no356_n18.g1 PHD_FILE: MSMg01no356_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:42 2005
         (412 letters)



>mm_chr5_70337167_70337978
          Length = 812

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/370 (98%)
 Strand = Plus / Minus

                                                                       
Query: 43  ctaaatttcttcagtgcctgttgtaatgggcctattgtaattttgaattttatttatctg 102
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 812 ctaaatttcttcagtgcctgttgtaatgggcctattttaattttgaattttatttatctg 753

                                                                       
Query: 103 aatcttctctgtgttttagttaatttagaaaaaaattaaccaatcttactgactttctcc 162
           ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 752 aatcttctctgtgttttagttaatttagataaaaatttaccaaacttactgactttctcc 693

                                                                       
Query: 163 aaagccaacacttgtattcattcatttttgtaagtttttttatattgacacatcctgagt 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaagccaacacttgtattcattcatttttgtaagtttttttatattgacacatcctgagt 633

                                                                       
Query: 223 taaattattttctgtggttttggaatattttttatgatgaaccataaatagtagttatat 282
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 632 taaattattttctgtggttttggaatataatttatgatgaaccataaatagtagttatat 573

                                                                       
Query: 283 ttatagattaagaactattattgcatagctcagtgacaataggctacttactcttccatt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttatagattaagaactattattgcatagctcagtgacaataggctacttactcttccatt 513

                                                                       
Query: 343 cgaaatggaaacacttcatagagtcaatgcagagtaagcctagtgttttagataaagtaa 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cgaaatggaaacacttcatagagtcaatgcagagtaagcctagtgttttagataaagtaa 453

                     
Query: 403 agaccaattt 412
           ||||||||||
Sbjct: 452 agaccaattt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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