XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATCTTCTGGA
GTCCACCTTTTTGAGTTCTTTATATATATTGGATATGAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTATGAAAAGAAAAACAGAAAATAAAGA
AGAACAGAGAATTTGGCAAATGTCAACAAGTTGTTCAAAGTGACTAGAGA
ATAAGTACAGAAAAAAAAAATCACTGTATCACATGGTGAGCCTCATGGAC
TATTTTTCCTCTGAAGTAGAGCTTTCTTTTCGTTACGTCCTGTTCAATGG
GGCAAGCTGATCTGGACAGTCAGTGAAGCACAATGTACTCACAAGCCACT
GAATCTGCTGCTCCTTGGCATAGACTGAAGCAGAAGTCAGATCAGTCAAT
TGTGGGCCTAGAAATTTGTGCAAGGCCAAGGGTAATTCCTATGGGAGCGA
GCCTTTTGAGGGGATGAAGGGATAACTTTCTAGTTTATCCAGTTTGAAAT
GAGAACAAACACAAGCATTATGTGCCTTTTTTGTACCTTTAAAAATATTT
CAATTCAGACACTTAGNTATTCTGCTGATTCACAGTTAAGTACCATCCTC
GAAACTGATACCCCCAAGAAACCCTTAGTTGAAACTTTTTTCGCGGCCCT
CCTTTAGAGAAAAAATTCCCCACTATTTTAATTCCCCTTTGTACCCCGGG
GTTTAGGCCCTATATAGAAAATG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTCTATACACTAGTTTTTTAT
TGGGTTGTTTAGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTT
TGGATAATAGCCCTCTATCAGATGTGAGGTTAGTGACGATTGTATTCCCA
ATATGTAGGTTGCTGATTTGTCTTATTGACTATTTCCTTTGCCATACAGA
AGCTTTCCAGTTTTCCTTTGCCATACAGAAGCTTTCCAGTTTCATGAGGT
GCCATTTATCAATTCTTGATGTTAGAGCATGAGTCATTGGAGTTCTGTTT
AAGAAATTTCCCCCTGTACCTATGAACTCAAGACTCTTTCCCACTTTAAC
TTCTATTAGATTCAGTGTATCTAGTTTTATGTTGAGGTCTTGATCCACTT
GGACTTGAGCTTTGTAAAAAGTGACAAATATGGGTCTATTTTCATTCTTC
TACACAGAGGCAGCCAGTTAGAACAGCACCATGTATTAAAGATGCTTTCT
ATCAGCACCAGCCCCAGGCCACCTTGGATTTGAACTCTGCCTAATTGTCC
TCTGGTGAAGGGGGATTAAACTCTTGTTCTTAATAAATTGTGAGGGGCCC
GGGCTTTACTGACCATGATTCGCGAACCCTTGCTGACCAAATAGTTGGTC
TCTTTTGTCTTATCGTTTTCTCTTTGGTTCTTTATCATAATTTCTTCTCT
TCTCTACGTTTTATTCCTTCTT

Query= MSMg01no357_b17.b1 MSMg01no357_b17.b1 CHROMAT_FILE:
MSMg01no357_b17.b1 PHD_FILE: MSMg01no357_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:01 2005
         (544 letters)



>mm_chr5_56415437_56416380
          Length = 944

 Score =  878 bits (454), Expect = 0.0
 Identities = 520/542 (95%), Gaps = 5/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcagttctgagccccattttttaatggggttatttgatcttctggagtc 64
           ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 206 gaattctttgttcagctctgagcccca-tttttaatggggttatttgattttctggagtc 264

                                                                       
Query: 65  cacctttttgagttctttatatatattggatatgagtcccctatctgatttaggataggt 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 cacctttttgagttctttatatatattggatatgagtctcctatctgatttaggataggt 324

                                                                       
Query: 125 aaagatcctttatgaaaagaaaaacagaaaataaagaagaacagagaatttggcaaatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcctttatgaaaagaaaaacagaaaataaagaagaacagagaatttggcaaatgt 384

                                                                       
Query: 185 caacaagttgttcaaagtgactagagaataagtacag-aaaaaaaaaatcactgtatcac 243
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 caacaagttgttctaagtgactagagaataagtacagaaaaaaaaaaatcactgtatcac 444

                                                                       
Query: 244 atggtgagcctcatggac-tatttttcctctgaagtagagctttcttttcgttacgtcct 302
           |||||||| ||||||||| | |||||||||||  |||||||| |||||||||||  ||||
Sbjct: 445 atggtgagtctcatggacat-tttttcctctgtggtagagctctcttttcgttatatcct 503

                                                                       
Query: 303 gttcaatggggcaagctgatctggacagtcagtgaagcacaatgtactcacaagccactg 362
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 504 gttcaatggggcaagctgatctgg-cagtcagtgaatcacaatgtactcacaagccactg 562

                                                                       
Query: 363 aatctgctgctccttggcatagactgaagcagaagtcagatcagtcaattgtgggcctag 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 aatctgctgctccttggcatagactgaagcagaagtcagatcagtcaattgtggtcctag 622

                                                                       
Query: 423 aaatttgtgcaaggccaagggtaattcctatgggagcgagccttttgaggggatgaaggg 482
           ||||||||| |||||||||||||||||||||||||| |||||  ||||||||||||||||
Sbjct: 623 aaatttgtgtaaggccaagggtaattcctatgggagtgagccccttgaggggatgaaggg 682

                                                                       
Query: 483 ataactttctagtttatccagtttgaaatgagaacaaacacaagcattatgtgccttttt 542
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 683 ataactttctagtttatccagtttgaaatgagaacaaacagaagcattatgtgccttttt 742

             
Query: 543 tg 544
           ||
Sbjct: 743 tg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)